RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 PLAGL2Q9UPG8 496 aa9.49□□□□□ -0.89
VMP1-208ENST00000588617 PPP2R3BQ9Y5P8 575 aa9.49□□□□□ -0.89
VMP1-208ENST00000588617 ABHD14A-ACY1A0A1B0GW23 586 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 KLRG2A4D1S0 409 aaPredicted RBP9.48□□□□□ -0.89
VMP1-208ENST00000588617 F5H423 210 aaPredicted RBP9.48□□□□□ -0.89
VMP1-208ENST00000588617 H3BML4 177 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 SLC27A2O14975 620 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 NBNO60934 754 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 ESR1P03372 595 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 LPLP06858 475 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 ZKSCAN1P17029 563 aaPredicted RBP9.48□□□□□ -0.89
VMP1-208ENST00000588617 GJA4P35212 333 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 CEBPAP49715 358 aaPredicted RBP9.48□□□□□ -0.89
VMP1-208ENST00000588617 FAM193AP78312 1265 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 ALDH6A1Q02252 535 aaKnown RBP9.48□□□□□ -0.89
VMP1-208ENST00000588617 BTBD8Q5XKL5 378 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 DENND1CQ8IV53 801 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 LZTR1Q8N653 840 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 C7orf31Q8N865 590 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 JMJD8Q96S16 334 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 MTA3Q9BTC8 594 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 TMEM60Q9H2L4 133 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 ATP13A1Q9HD20 1204 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 TNFRSF10DQ9UBN6 386 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 RAXQ9Y2V3 346 aa9.48□□□□□ -0.89
VMP1-208ENST00000588617 PRAMEF25A6NGN4 478 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 FAM90A27PA6NNH2 459 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 FAM227AF5H4B4 570 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 FOXP2O15409 715 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 MAFKO60675 156 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 DTNBO60941 627 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 F13BP05160 661 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 PTPN1P18031 435 aaKnown RBP9.47□□□□□ -0.89
VMP1-208ENST00000588617 CD53P19397 219 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 COL8A1P27658 744 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 SDHAP31040 664 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 SLC16A1P53985 500 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 PITRM1Q5JRX3 1037 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 STEAP3Q658P3 488 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 SPTY2D1Q68D10 685 aaPredicted RBP9.47□□□□□ -0.89
VMP1-208ENST00000588617 DARS2Q6PI48 645 aaKnown RBP9.47□□□□□ -0.89
VMP1-208ENST00000588617 PHYKPLQ8IUZ5 450 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 CPXCR1Q8N123 301 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.47□□□□□ -0.89
VMP1-208ENST00000588617 AUTS2Q8WXX7 1259 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 ERCC4Q92889 916 aaPredicted RBP9.47□□□□□ -0.89
VMP1-208ENST00000588617 FERMT2Q96AC1 680 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 SYTL4Q96C24 671 aaPredicted RBP9.47□□□□□ -0.89
VMP1-208ENST00000588617 CCDC138Q96M89 665 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 TBCBQ99426 244 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 POFUT1Q9H488 388 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 CASS4Q9NQ75 786 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 FNIP2Q9P278 1114 aa9.47□□□□□ -0.89
VMP1-208ENST00000588617 PRSS38A1L453 326 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 UBXN7O94888 489 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 C4BPAP04003 597 aaKnown RBP9.46□□□□□ -0.9
VMP1-208ENST00000588617 ECE1P42892 770 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 SEMA5AQ13591 1074 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 KRT72Q14CN4 511 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 PGS1Q32NB8 556 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 MBNL2Q5VZF2 373 aaKnown RBP9.46□□□□□ -0.9
VMP1-208ENST00000588617 PRR18Q8N4B5 295 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 NLGN2Q8NFZ4 835 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 APOL5Q9BWW9 433 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 SMOC1Q9H4F8 434 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 LRRC4CQ9HCJ2 640 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 LUZP4Q9P127 313 aa9.46□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQ27 194 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQ64 194 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQC6 194 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQD8 194 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 FADS2P1A8MWK0 482 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 B3GALT2O43825 422 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 PIP5K1CO60331 668 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 APOL3O95236 402 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 DUSP4Q13115 394 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 TUSC3Q13454 348 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 MUM1Q2TAK8 710 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 TIGD7Q6NT04 549 aaPredicted RBP9.45□□□□□ -0.9
VMP1-208ENST00000588617 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.45□□□□□ -0.9
VMP1-208ENST00000588617 PGBD4Q96DM1 585 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 SCLT1Q96NL6 688 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 B3GNT5Q9BYG0 378 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 BHMT2Q9H2M3 363 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 RC3H2Q9HBD1 1191 aaKnown RBP9.45□□□□□ -0.9
VMP1-208ENST00000588617 DPP7Q9UHL4 492 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 TELO2Q9Y4R8 837 aa9.45□□□□□ -0.9
VMP1-208ENST00000588617 MORC2Q9Y6X9 1032 aaPredicted RBP9.45□□□□□ -0.9
VMP1-208ENST00000588617 LOC100996750A0A140TA64 210 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQ45 241 aaPredicted RBP9.44□□□□□ -0.9
VMP1-208ENST00000588617 A0A1W2PQY0 241 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 ELL2O00472 640 aaPredicted RBP9.44□□□□□ -0.9
VMP1-208ENST00000588617 CENPBP07199 599 aaPredicted RBP9.44□□□□□ -0.9
VMP1-208ENST00000588617 EPHA5P54756 1037 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 IFIT5Q13325 482 aaKnown RBP9.44□□□□□ -0.9
VMP1-208ENST00000588617 CHRNA2Q15822 529 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 ZBTB41Q5SVQ8 909 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 RNF220Q5VTB9 566 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 CYP4F22Q6NT55 531 aa9.44□□□□□ -0.9
VMP1-208ENST00000588617 ZNF354CQ86Y25 554 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms