RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SMAD3P84022 425 aaKnown RBP7.54□□□□□ -1.2
NUP88-213ENST00000576862 EPHA7Q15375 998 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 DHCR24Q15392 516 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 Q6ZUG5 572 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 CXXC5Q7LFL8 322 aaKnown RBP7.54□□□□□ -1.2
NUP88-213ENST00000576862 LCORQ96JN0 433 aaPredicted RBP7.54□□□□□ -1.2
NUP88-213ENST00000576862 C20orf173Q96LM9 149 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 FOXB1Q99853 325 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 TOMM22Q9NS69 142 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 SBNO2Q9Y2G9 1366 aa7.54□□□□□ -1.2
NUP88-213ENST00000576862 FKBP9O95302 570 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 KPNA1P52294 538 aaPredicted RBP7.53□□□□□ -1.2
NUP88-213ENST00000576862 CD83Q01151 205 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 NFATC3Q12968 1075 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 TOP3AQ13472 1001 aaPredicted RBP7.53□□□□□ -1.2
NUP88-213ENST00000576862 FKBP9P1Q75LS8 142 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 DDX46Q7L014 1031 aaKnown RBP7.53□□□□□ -1.2
NUP88-213ENST00000576862 FRMD5Q7Z6J6 570 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 KLHL36Q8N4N3 616 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 AJUBAQ96IF1 538 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 KATNBL1Q9H079 304 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 ADAM7Q9H2U9 754 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 USP40Q9NVE5 1235 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 ADAM29Q9UKF5 820 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 PRKAB1Q9Y478 270 aa7.53□□□□□ -1.2
NUP88-213ENST00000576862 UBA6A0AVT1 1052 aaPredicted RBP7.52□□□□□ -1.21
NUP88-213ENST00000576862 B4GALT3O60512 393 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 POLD1P28340 1107 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 ADCY8P40145 1251 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 RGS3P49796 1198 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 IL2P60568 153 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 SLC6A3Q01959 620 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 SART3Q15020 963 aaKnown RBP7.52□□□□□ -1.21
NUP88-213ENST00000576862 WDR72Q3MJ13 1102 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 ZNF662Q6ZS27 426 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 KRT26Q7Z3Y9 468 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 AFAP1L2Q8N4X5 818 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 CHAC2Q8WUX2 184 aa7.52□□□□□ -1.21
NUP88-213ENST00000576862 SOX5P35711 763 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 ID4P47928 161 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 KIAA2012Q0VF49 1180 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 CALML6Q8TD86 181 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 RTF1Q92541 710 aaKnown RBP7.51□□□□□ -1.21
NUP88-213ENST00000576862 E2F7Q96AV8 911 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 MAML3Q96JK9 1138 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 EMC7Q9NPA0 242 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 RAPGEFL1Q9UHV5 662 aa7.51□□□□□ -1.21
NUP88-213ENST00000576862 NEMP1O14524 444 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 PRICKLE3O43900 615 aaPredicted RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 POU3F3P20264 500 aaPredicted RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 APEX1P27695 318 aaKnown RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 CSF2RBP32927 897 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 PHC1P78364 1004 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 STRN3Q13033 797 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 MOGSQ13724 837 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 LRRC32Q14392 662 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 MYBPC3Q14896 1274 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 TTC38Q5R3I4 469 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 TMEM200BQ69YZ2 307 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 NME9Q86XW9 330 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 BCL6BQ8N143 479 aaPredicted RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 FAM126AQ9BYI3 521 aaPredicted RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 ZDHHC5Q9C0B5 715 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 MS4A5Q9H3V2 200 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 BARX1Q9HBU1 254 aaPredicted RBP7.5□□□□□ -1.21
NUP88-213ENST00000576862 RTEL1Q9NZ71 1219 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.5□□□□□ -1.21
NUP88-213ENST00000576862 PTPN22Q9Y2R2 807 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 ZDHHC9Q9Y397 364 aa7.5□□□□□ -1.21
NUP88-213ENST00000576862 LCHNA4D1U4 455 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 CUTAO60888 179 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 MAFO75444 373 aaPredicted RBP7.49□□□□□ -1.21
NUP88-213ENST00000576862 ZNF888P0CJ79 500 aaPredicted RBP7.49□□□□□ -1.21
NUP88-213ENST00000576862 OCRLQ01968 901 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 ROM1Q03395 351 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 ADCY1Q08828 1119 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 TERF2Q15554 542 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 ZFYVE27Q5T4F4 411 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 GPR158Q5T848 1215 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 SLFN12LQ6IEE8 588 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 GPR155Q7Z3F1 870 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 FERMT3Q86UX7 667 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 PASD1Q8IV76 773 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 REXO1L1PQ8IX06 675 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 KBTBD2Q8IY47 623 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 ZZZ3Q8IYH5 903 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 USP7Q93009 1102 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 TEPSINQ96N21 525 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 TUBGCP5Q96RT8 1024 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 SEMA4AQ9H3S1 761 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 IFT22Q9H7X7 185 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 CDC42EP3Q9UKI2 254 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 INVSQ9Y283 1065 aa7.49□□□□□ -1.21
NUP88-213ENST00000576862 ARID1BQ8NFD5 2236 aaPredicted RBP7.48□□□□□ -1.21
NUP88-213ENST00000576862 EYA4O95677 639 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 CD40P25942 277 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 CNR2P34972 360 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 ETV4P43268 484 aa7.48□□□□□ -1.21
NUP88-213ENST00000576862 EIF4HQ15056 248 aaKnown RBP7.48□□□□□ -1.21
NUP88-213ENST00000576862 GRAMD4Q6IC98 578 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms