RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 EIF3AQ14152 1382 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 GPR25O00155 361 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 FSCN2O14926 492 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 EIF4EBP3O60516 100 aaPredicted RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 CTNND1O60716 968 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 H2AFYO75367 372 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 HSP90AA1P07900 732 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 SRGAP2CP0DJJ0 459 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 SETSIPP0DME0 302 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 RHCEP18577 417 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 AFF1P51825 1210 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 AK2P54819 239 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 SCAND1P57086 179 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 SESN3P58005 492 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 RHDQ02161 417 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 ID3Q02535 119 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 CYP4F3Q08477 520 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 BIRC3Q13489 604 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 ACAP2Q15057 778 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 RGL3Q3MIN7 710 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 RRP12Q5JTH9 1297 aaKnown RBP6.99□□□□□ -1.29
VPS53-219ENST00000576019 CATIPQ7Z7H3 387 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 FIBCD1Q8N539 461 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 CHST14Q8NCH0 376 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 SLC35G2Q8TBE7 412 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 DIO2Q92813 273 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 KLHDC7BQ96G42 594 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 CCDC140Q96MF4 163 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 MYD88Q99836 296 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 PHF20Q9BVI0 1012 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 B4GALT6Q9UBX8 382 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 FBXL21Q9UKT6 434 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 HDAC9Q9UKV0 1011 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 RGPD5Q99666 1765 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 ANKRD50Q9ULJ7 1429 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 KIF1BO60333 1816 aa6.99□□□□□ -1.29
VPS53-219ENST00000576019 DLEC1Q9Y238 1755 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 LOC100289279A0A1B0GTE1 492 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 ARVCFO00192 962 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 C2CD2LO14523 706 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 TPP1O14773 563 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 VAMP4O75379 141 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 DLGAP3O95886 979 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 CPP00450 1065 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 SCG5P05408 212 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 SLC5A1P13866 664 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 TYRP1P17643 537 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 VCAM1P19320 739 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 RENBPP51606 427 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 KRT85P78386 507 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 TRIM14Q14142 442 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 LRRC32Q14392 662 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 DPY19L1Q2PZI1 675 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 TMEM177Q53S58 311 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 PPIL6Q8IXY8 311 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 CCDC155Q8N6L0 562 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 ATXN2LQ8WWM7 1075 aaKnown RBP6.98□□□□□ -1.29
VPS53-219ENST00000576019 WNT8BQ93098 351 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 TEKT5Q96M29 485 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 SELENOOQ9BVL4 669 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 ZNF69Q9UC07 566 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 GDF2Q9UK05 429 aaPredicted RBP6.98□□□□□ -1.29
VPS53-219ENST00000576019 PPP1R9AQ9ULJ8 1098 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 PTPN22Q9Y2R2 807 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 PCDHB12Q9Y5F1 795 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 ATRXP46100 2492 aa6.98□□□□□ -1.29
VPS53-219ENST00000576019 PTPDC1A2A3K4 754 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 BDP1A6H8Y1 2624 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 CCER2I3L3R5 266 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 TMPRSS2O15393 492 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 OFD1O75665 1012 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 RGS9O75916 674 aaPredicted RBP6.97□□□□□ -1.29
VPS53-219ENST00000576019 CKMP06732 381 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 BMP4P12644 408 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 NAT1P18440 290 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 ALDH5A1P51649 535 aaPredicted RBP6.97□□□□□ -1.29
VPS53-219ENST00000576019 GEMIN4P57678 1058 aaKnown RBP6.97□□□□□ -1.29
VPS53-219ENST00000576019 SCRN1Q12765 414 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 SLBPQ14493 270 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS53-219ENST00000576019 KRT72Q14CN4 511 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 FER1L6Q2WGJ9 1857 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 L1TD1Q5T7N2 865 aaKnown RBP6.97□□□□□ -1.29
VPS53-219ENST00000576019 BROXQ5VW32 411 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 CHST15Q7LFX5 561 aaPredicted RBP6.97□□□□□ -1.29
VPS53-219ENST00000576019 CACTIN-AS1Q8N1I8 211 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 PDILTQ8N807 584 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 ZBTB34Q8NCN2 500 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 PPP1R13LQ8WUF5 828 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 NEUROD6Q96NK8 337 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 RAD18Q9NS91 495 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 PCDHGB3Q9Y5G1 929 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 FHOD1Q9Y613 1164 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 DGKBQ9Y6T7 804 aa6.97□□□□□ -1.29
VPS53-219ENST00000576019 POLR3AO14802 1390 aaPredicted RBP6.96□□□□□ -1.29
VPS53-219ENST00000576019 KMT2BQ9UMN6 2715 aaPredicted RBP6.96□□□□□ -1.29
VPS53-219ENST00000576019 NCOR1O75376 2440 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 CPSF1Q10570 1443 aaKnown RBP6.96□□□□□ -1.3
VPS53-219ENST00000576019 KLHL33A6NCF5 533 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 KRT37O76014 449 aa6.96□□□□□ -1.3
VPS53-219ENST00000576019 CST3P01034 146 aaPredicted RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms