RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 EPB41L2O43491 1005 aaKnown RBP18.23■□□□□ 0.51
CLN3-229ENST00000567963 STAG3L1P0CL83 205 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 COL19A1Q14993 1142 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 TMEM266Q2M3C6 531 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 CCDC148Q8NFR7 591 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 LENG9Q96B70 501 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 PABPC5Q96DU9 382 aaKnown RBP18.23■□□□□ 0.51
CLN3-229ENST00000567963 PLVAPQ9BX97 442 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 LMAN2LQ9H0V9 348 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 NCOA5Q9HCD5 579 aaKnown RBP18.23■□□□□ 0.51
CLN3-229ENST00000567963 VPS54Q9P1Q0 977 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 GINS2Q9Y248 185 aa18.23■□□□□ 0.51
CLN3-229ENST00000567963 EDIL3O43854 480 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 PSAPP07602 524 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 NFX1Q12986 1120 aaKnown RBP18.22■□□□□ 0.51
CLN3-229ENST00000567963 TOB2Q14106 344 aaPredicted RBP18.22■□□□□ 0.51
CLN3-229ENST00000567963 FAM43BQ6ZT52 329 aaPredicted RBP18.22■□□□□ 0.51
CLN3-229ENST00000567963 FAM178BQ8IXR5 827 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 CKAP2LQ8IYA6 745 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 CMTR2Q8IYT2 770 aaKnown RBP18.22■□□□□ 0.51
CLN3-229ENST00000567963 EPHX3Q9H6B9 360 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 ZSWIM6Q9HCJ5 1215 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 CD320Q9NPF0 282 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 SH3GLB2Q9NR46 395 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 ATG2AQ2TAZ0 1938 aa18.22■□□□□ 0.51
CLN3-229ENST00000567963 MYO7AQ13402 2215 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 GRXCR2A6NFK2 248 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 H3BQ06 376 aaPredicted RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 RPS6KA5O75582 802 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 C22orf31O95567 290 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 PUS10Q3MIT2 529 aaKnown RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 PTCRAQ6ISU1 281 aaPredicted RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 TRMT1LQ7Z2T5 733 aaKnown RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 TMEM40Q8WWA1 233 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 ERVK-5Q9HDB9 667 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 TCEAL9Q9UHQ7 104 aa18.21■□□□□ 0.51
CLN3-229ENST00000567963 NOC2LQ9Y3T9 749 aaKnown RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 MRPL42Q9Y6G3 142 aaKnown RBP18.21■□□□□ 0.51
CLN3-229ENST00000567963 NCK2O43639 380 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 IL9P15248 144 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 USP11P51784 963 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 KHSRPQ92945 711 aaKnown RBP eCLIP18.2■□□□□ 0.5
CLN3-229ENST00000567963 P2RX5Q93086 422 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 ALG13Q9NP73 1137 aaKnown RBP18.2■□□□□ 0.5
CLN3-229ENST00000567963 GABBR1Q9UBS5 961 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 PLAGL2Q9UPG8 496 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 SAMM50Q9Y512 469 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 WDR81Q562E7 1941 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 GPR182O15218 404 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 MSH4O15457 936 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 MGEA5O60502 916 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 MMP1P03956 469 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 SARSP49591 514 aaKnown RBP18.2■□□□□ 0.5
CLN3-229ENST00000567963 NLRP5P59047 1200 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 CAMK1Q14012 370 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 NAALADL2Q58DX5 795 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 ODR4Q5SWX8 454 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 EP400NLQ6ZTU2 488 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 METTL13Q8N6R0 699 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 RGS18Q9NS28 235 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 CLDND1Q9NY35 253 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 LRFN2Q9ULH4 789 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 ST3GAL5Q9UNP4 418 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 CEP131Q9UPN4 1083 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 PCDHB7Q9Y5E2 793 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 CYP46A1Q9Y6A2 500 aa18.2■□□□□ 0.5
CLN3-229ENST00000567963 C5orf42Q9H799 3197 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 GPR32O75388 356 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 LTBRP36941 435 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 CRYBB1P53674 252 aaPredicted RBP18.19■□□□□ 0.5
CLN3-229ENST00000567963 SSRP1Q08945 709 aaKnown RBP18.19■□□□□ 0.5
CLN3-229ENST00000567963 KIZQ2M2Z5 673 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 CTC1Q2NKJ3 1217 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 PAN2Q504Q3 1202 aaKnown RBP18.19■□□□□ 0.5
CLN3-229ENST00000567963 TRIM22Q8IYM9 498 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 GJD3Q8N144 294 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 ZNF274Q96GC6 653 aaPredicted RBP18.19■□□□□ 0.5
CLN3-229ENST00000567963 PPP1R16BQ96T49 567 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 ADAM2Q99965 735 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 DISC1Q9NRI5 854 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 RAPGEFL1Q9UHV5 662 aa18.19■□□□□ 0.5
CLN3-229ENST00000567963 KIAA1671Q9BY89 1806 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 DENND3A2RUS2 1198 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 WDR64B1ANS9 1081 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 MAGEB2O15479 319 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 VTNP04004 478 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 ITGB1P05556 798 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 GATMP50440 423 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 HYAL1Q12794 435 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 SLC24A5Q71RS6 500 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 SPPL3Q8TCT6 385 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 TBCKQ8TEA7 893 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 FAM167AQ96KS9 214 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 RIT2Q99578 217 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 OSMRQ99650 979 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 TM6SF1Q9BZW5 370 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 C1orf112Q9NSG2 853 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 PCDHA4Q9UN74 947 aa18.18■□□□□ 0.5
CLN3-229ENST00000567963 C9IYK1 514 aa18.17■□□□□ 0.5
CLN3-229ENST00000567963 PI4K2BG5E9Z4 385 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms