RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FAM50BQ9Y247 325 aa21.23■□□□□ 0.99
CLN3-218ENST00000565688 PCDHA10Q9Y5I2 948 aa21.23■□□□□ 0.99
CLN3-218ENST00000565688 MAFBQ9Y5Q3 323 aaPredicted RBP21.23■□□□□ 0.99
CLN3-218ENST00000565688 GRXCR2A6NFK2 248 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 GRM6O15303 877 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 FAM178BQ8IXR5 827 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 P2RX5Q93086 422 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 SLC26A6Q9BXS9 759 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 SH3GLB2Q9NR46 395 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 LRFN2Q9ULH4 789 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 CEP131Q9UPN4 1083 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 GINS2Q9Y248 185 aa21.22■□□□□ 0.99
CLN3-218ENST00000565688 ZBTB42B2RXF5 422 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 ADAMTS3O15072 1205 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 RPS6KA5O75582 802 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 MMP1P03956 469 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 ATP4AP20648 1035 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 PDIA3P30101 505 aaKnown RBP21.21■□□□□ 0.99
CLN3-218ENST00000565688 NFX1Q12986 1120 aaKnown RBP21.21■□□□□ 0.99
CLN3-218ENST00000565688 FAM167AQ96KS9 214 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 TMX1Q9H3N1 280 aa21.21■□□□□ 0.99
CLN3-218ENST00000565688 MRPL42Q9Y6G3 142 aaKnown RBP21.21■□□□□ 0.99
CLN3-218ENST00000565688 H3BQ06 376 aaPredicted RBP21.2■□□□□ 0.98
CLN3-218ENST00000565688 GPR182O15218 404 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 C22orf31O95567 290 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 SARSP49591 514 aaKnown RBP21.2■□□□□ 0.98
CLN3-218ENST00000565688 USP11P51784 963 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 TMEM266Q2M3C6 531 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 EP400NLQ6ZTU2 488 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 RUFY3Q7L099 469 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 TRIM22Q8IYM9 498 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 RASGRP4Q8TDF6 673 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 UIMC1Q96RL1 719 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 EPHX3Q9H6B9 360 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 ERVK-5Q9HDB9 667 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 C1orf112Q9NSG2 853 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 CLDND1Q9NY35 253 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 PLAGL2Q9UPG8 496 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 NOC2LQ9Y3T9 749 aaKnown RBP21.2■□□□□ 0.98
CLN3-218ENST00000565688 SAMM50Q9Y512 469 aa21.2■□□□□ 0.98
CLN3-218ENST00000565688 DENND3A2RUS2 1198 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 WDR64B1ANS9 1081 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 MAGEB2O15479 319 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 IL9P15248 144 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 CRYBB1P53674 252 aaPredicted RBP21.19■□□□□ 0.98
CLN3-218ENST00000565688 CCT2P78371 535 aaKnown RBP21.19■□□□□ 0.98
CLN3-218ENST00000565688 GJD3Q8N144 294 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 ZNF710Q8N1W2 664 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 METTL13Q8N6R0 699 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 PPP2R3CQ969Q6 453 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 LENG9Q96B70 501 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 C22orf23Q9BZE7 217 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 NCOA5Q9HCD5 579 aaKnown RBP21.19■□□□□ 0.98
CLN3-218ENST00000565688 ZSWIM6Q9HCJ5 1215 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 VPS54Q9P1Q0 977 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 GABBR1Q9UBS5 961 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 PCDHB7Q9Y5E2 793 aa21.19■□□□□ 0.98
CLN3-218ENST00000565688 LOXHD1Q8IVV2 1947 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 PPFIA3O75145 1194 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 NLRP5P59047 1200 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 CTC1Q2NKJ3 1217 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 SLC24A5Q71RS6 500 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 TMEM40Q8WWA1 233 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 RIT2Q99578 217 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 CDHR5Q9HBB8 845 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 ALG13Q9NP73 1137 aaKnown RBP21.18■□□□□ 0.98
CLN3-218ENST00000565688 CD320Q9NPF0 282 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 RGS18Q9NS28 235 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 ST3GAL5Q9UNP4 418 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 CYP46A1Q9Y6A2 500 aa21.18■□□□□ 0.98
CLN3-218ENST00000565688 PI4K2BG5E9Z4 385 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 SSTR3P32745 418 aaPredicted RBP21.17■□□□□ 0.98
CLN3-218ENST00000565688 SSRP1Q08945 709 aaKnown RBP21.17■□□□□ 0.98
CLN3-218ENST00000565688 HYAL1Q12794 435 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 KIZQ2M2Z5 673 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 PAN2Q504Q3 1202 aaKnown RBP21.17■□□□□ 0.98
CLN3-218ENST00000565688 TMEM31Q5JXX7 168 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 ADAM2Q99965 735 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 DISC1Q9NRI5 854 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 NRBP2Q9NSY0 501 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 PRKAG3Q9UGI9 489 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 MYH9P35579 1960 aaKnown RBP21.17■□□□□ 0.98
CLN3-218ENST00000565688 MYO7AQ13402 2215 aa21.17■□□□□ 0.98
CLN3-218ENST00000565688 CPLX1O14810 134 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 MSH4O15457 936 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 GAS7O60861 476 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 GPR32O75388 356 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 TMOD1P28289 359 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 SFNP31947 248 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 TOB2Q14106 344 aaPredicted RBP21.16■□□□□ 0.98
CLN3-218ENST00000565688 TRMT1LQ7Z2T5 733 aaKnown RBP21.16■□□□□ 0.98
CLN3-218ENST00000565688 FAM177A1Q8N128 213 aaPredicted RBP21.16■□□□□ 0.98
CLN3-218ENST00000565688 KHSRPQ92945 711 aaKnown RBP eCLIP21.16■□□□□ 0.98
CLN3-218ENST00000565688 ZNF274Q96GC6 653 aaPredicted RBP21.16■□□□□ 0.98
CLN3-218ENST00000565688 MAP7D2Q96T17 732 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 OSMRQ99650 979 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 TM6SF1Q9BZW5 370 aa21.16■□□□□ 0.98
CLN3-218ENST00000565688 C9IYK1 514 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 MGEA5O60502 916 aa21.15■□□□□ 0.98
CLN3-218ENST00000565688 GPR37L1O60883 481 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms