RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NAALADL2Q58DX5 795 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 SMAP1Q8IYB5 467 aaPredicted RBP19.44■□□□□ 0.7
CLN3-216ENST00000565316 GJD3Q8N144 294 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 ZNF577Q9BSK1 485 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 LRFN3Q9BTN0 628 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 ERVK-5Q9HDB9 667 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 PLAGL2Q9UPG8 496 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 GPR37L1O60883 481 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 MMP1P03956 469 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 CAMK1Q14012 370 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 BICD2Q8TD16 824 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 BBXQ8WY36 941 aaPredicted RBP19.43■□□□□ 0.7
CLN3-216ENST00000565316 PHKBQ93100 1093 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 LENG9Q96B70 501 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 RNF26Q9BY78 433 aaPredicted RBP19.43■□□□□ 0.7
CLN3-216ENST00000565316 CDHR5Q9HBB8 845 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 C11orf16Q9NQ32 467 aa19.43■□□□□ 0.7
CLN3-216ENST00000565316 NOC2LQ9Y3T9 749 aaKnown RBP19.43■□□□□ 0.7
CLN3-216ENST00000565316 C22orf31O95567 290 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 IFNAR1P17181 557 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 PSMA5P28066 241 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 SARSP49591 514 aaKnown RBP19.42■□□□□ 0.7
CLN3-216ENST00000565316 HYAL1Q12794 435 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 TMEM266Q2M3C6 531 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 TMEM31Q5JXX7 168 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 TMEM40Q8WWA1 233 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 UIMC1Q96RL1 719 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 CLDND1Q9NY35 253 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 PCDHA10Q9Y5I2 948 aa19.42■□□□□ 0.7
CLN3-216ENST00000565316 EDIL3O43854 480 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 MGEA5O60502 916 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 RPS6KA5O75582 802 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 AKAP17AQ02040 695 aaKnown RBP19.41■□□□□ 0.7
CLN3-216ENST00000565316 PRR16Q569H4 304 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 SPPL3Q8TCT6 385 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 ALG13Q9NP73 1137 aaKnown RBP19.41■□□□□ 0.7
CLN3-216ENST00000565316 RGS18Q9NS28 235 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 PRKAG3Q9UGI9 489 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 FAM50BQ9Y247 325 aa19.41■□□□□ 0.7
CLN3-216ENST00000565316 ATG2AQ2TAZ0 1938 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 REC8O95072 547 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 ITGB1P05556 798 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 PSAPP07602 524 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 DNAJB1P25685 340 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 PDIA3P30101 505 aaKnown RBP19.4■□□□□ 0.7
CLN3-216ENST00000565316 CRYBB1P53674 252 aaPredicted RBP19.4■□□□□ 0.7
CLN3-216ENST00000565316 NFX1Q12986 1120 aaKnown RBP19.4■□□□□ 0.7
CLN3-216ENST00000565316 ODR4Q5SWX8 454 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 CCDC148Q8NFR7 591 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 RASGRP4Q8TDF6 673 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 SH3GLB2Q9NR46 395 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 ST3GAL5Q9UNP4 418 aa19.4■□□□□ 0.7
CLN3-216ENST00000565316 GPR182O15218 404 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 EPB41L2O43491 1005 aaKnown RBP19.39■□□□□ 0.69
CLN3-216ENST00000565316 GPR32O75388 356 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 GATMP50440 423 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 USP11P51784 963 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 FAM189BP81408 668 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 PAN2Q504Q3 1202 aaKnown RBP19.39■□□□□ 0.69
CLN3-216ENST00000565316 SLC24A5Q71RS6 500 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 CKAP2LQ8IYA6 745 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 KLHL23Q8NBE8 558 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 SLC26A6Q9BXS9 759 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 C1orf112Q9NSG2 853 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 RNF216Q9NWF9 866 aaPredicted RBP19.39■□□□□ 0.69
CLN3-216ENST00000565316 GABBR1Q9UBS5 961 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 LRFN2Q9ULH4 789 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 GINS2Q9Y248 185 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 ARIH1Q9Y4X5 557 aaPredicted RBP19.39■□□□□ 0.69
CLN3-216ENST00000565316 PCDHB7Q9Y5E2 793 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 LOXHD1Q8IVV2 1947 aa19.39■□□□□ 0.69
CLN3-216ENST00000565316 C19orf67A6NJJ6 358 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 C9IYK1 514 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 MAGEB2O15479 319 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 SSTR3P32745 418 aaPredicted RBP19.38■□□□□ 0.69
CLN3-216ENST00000565316 ZP2Q05996 745 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 DLX2Q07687 328 aaPredicted RBP19.38■□□□□ 0.69
CLN3-216ENST00000565316 ADAM15Q13444 863 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 KIZQ2M2Z5 673 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 EP400NLQ6ZTU2 488 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 LINC01465Q8N7H1 131 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 FAM167AQ96KS9 214 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 ADAM2Q99965 735 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 NCOA5Q9HCD5 579 aaKnown RBP19.38■□□□□ 0.69
CLN3-216ENST00000565316 VPS54Q9P1Q0 977 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 TCEAL9Q9UHQ7 104 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 CEP131Q9UPN4 1083 aa19.38■□□□□ 0.69
CLN3-216ENST00000565316 DENND3A2RUS2 1198 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 WDR64B1ANS9 1081 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 MSH4O15457 936 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 PPFIA3O75145 1194 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 GTF2F1P35269 517 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-216ENST00000565316 PLA2G5P39877 138 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 CCT2P78371 535 aaKnown RBP19.37■□□□□ 0.69
CLN3-216ENST00000565316 TOB2Q14106 344 aaPredicted RBP19.37■□□□□ 0.69
CLN3-216ENST00000565316 DSC3Q14574 896 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 SMAD2Q15796 467 aaKnown RBP19.37■□□□□ 0.69
CLN3-216ENST00000565316 RUFY3Q7L099 469 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 FAM228AQ86W67 206 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 ADHFE1Q8IWW8 467 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms