RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ECE1P42892 770 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 ETV4P43268 484 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 LSSP48449 732 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 PHC1P78364 1004 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 ALDH6A1Q02252 535 aaKnown RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 ADCY1Q08828 1119 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 LRRC32Q14392 662 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 TMEM132BQ14DG7 1078 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 SURF1Q15526 300 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 SEPT7Q16181 437 aaKnown RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 C21orf62-AS1Q17RA5 79 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 TRMT10BQ6PF06 316 aaKnown RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 BORAQ6PGQ7 559 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 KRT26Q7Z3Y9 468 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 PLEKHH3Q7Z736 793 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 PASD1Q8IV76 773 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 ADGRG2Q8IZP9 1017 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 STPG3Q8N7X2 389 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 ZCCHC4Q9H5U6 513 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 CAAP1Q9H8G2 361 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 BARX1Q9HBU1 254 aaPredicted RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 MSL2Q9HCI7 577 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 OXSMQ9NWU1 459 aa4.75□□□□□ -1.65
VPS35-203ENST00000562420 USP36Q9P275 1121 aaKnown RBP4.75□□□□□ -1.65
VPS35-203ENST00000562420 PRLP01236 227 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 CYP1A1P04798 512 aaPredicted RBP4.74□□□□□ -1.65
VPS35-203ENST00000562420 BPIP17213 487 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 POLD1P28340 1107 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 MC4RP32245 332 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 SOX5P35711 763 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 SCNN1BP51168 640 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 IL13RA1P78552 427 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 NFATC3Q12968 1075 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 TOP3AQ13472 1001 aaPredicted RBP4.74□□□□□ -1.65
VPS35-203ENST00000562420 PCBP1Q15365 356 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS35-203ENST00000562420 NT5DC1Q5TFE4 455 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 TMEM200BQ69YZ2 307 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 Q6ZUG5 572 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 FAM9AQ8IZU1 332 aaPredicted RBP4.74□□□□□ -1.65
VPS35-203ENST00000562420 LGI4Q8N135 537 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 HIPK4Q8NE63 616 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 TACO1Q9BSH4 297 aaKnown RBP4.74□□□□□ -1.65
VPS35-203ENST00000562420 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS35-203ENST00000562420 IFT57Q9NWB7 429 aa4.74□□□□□ -1.65
VPS35-203ENST00000562420 CNOT11Q9UKZ1 510 aaKnown RBP4.74□□□□□ -1.65
VPS35-203ENST00000562420 CLSPNQ9HAW4 1339 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 UBA6A0AVT1 1052 aaPredicted RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 OTOL1A6NHN0 477 aaPredicted RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 ZEB2O60315 1214 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 KRT37O76014 449 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 CD40P25942 277 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 APEX1P27695 318 aaKnown RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 GLRBP48167 497 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 MASP1P48740 699 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 ROM1Q03395 351 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 MAP3K12Q12852 859 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 SART3Q15020 963 aaKnown RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 EIF4HQ15056 248 aaKnown RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 ZNF827Q17R98 1081 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 TTC38Q5R3I4 469 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 ERICH6BQ5W0A0 696 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 MCTP2Q6DN12 878 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 NUDT10Q8NFP7 164 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 CHAC2Q8WUX2 184 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 NUDT11Q96G61 164 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 MAML3Q96JK9 1138 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 ELF4Q99607 663 aaPredicted RBP4.73□□□□□ -1.65
VPS35-203ENST00000562420 ANP32EQ9BTT0 268 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 ZDHHC5Q9C0B5 715 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 USP40Q9NVE5 1235 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 UCKL1Q9NWZ5 548 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 JAG2Q9Y219 1238 aa4.73□□□□□ -1.65
VPS35-203ENST00000562420 A0A0G2JLL6 359 aaPredicted RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 PRAMEF22A3QJZ6 481 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 ZNF891A8MT65 544 aaPredicted RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 CANXP27824 592 aaKnown RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 CSF2RBP32927 897 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 KPNA1P52294 538 aaPredicted RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 SMAD3P84022 425 aaKnown RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 ESRP1Q6NXG1 681 aaKnown RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 PHYKPLQ8IUZ5 450 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 IFNL2Q8IZJ0 200 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 AFAP1L2Q8N4X5 818 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 SYT8Q8NBV8 401 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 WDR48Q8TAF3 677 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 CXorf38Q8TB03 319 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 FEZF2Q8TBJ5 459 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 CHTF18Q8WVB6 975 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 RELTQ969Z4 430 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 HAPLN2Q9GZV7 340 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 ZMAT4Q9H898 229 aa4.72□□□□□ -1.65
VPS35-203ENST00000562420 APOBEC2Q9Y235 224 aaKnown RBP4.72□□□□□ -1.65
VPS35-203ENST00000562420 A0A0G2JNJ9 132 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 MAFGO15525 162 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 BRINP1O60477 761 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 FKBP9O95302 570 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 SLC9A1P19634 815 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 ADCYAP1R1P41586 468 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 BCAR1P56945 870 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 USP10Q14694 798 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms