RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZNF862O60290 1169 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 CD52P31358 61 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 CCDC85BQ15834 202 aaPredicted RBP17.66■□□□□ 0.42
VPS39-203ENST00000561797 KRT40Q6A162 431 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 KIAA0319LQ8IZA0 1049 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 METTL13Q8N6R0 699 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 FAM167AQ96KS9 214 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 PPP1R16BQ96T49 567 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 AGO3Q9H9G7 860 aaKnown RBP17.66■□□□□ 0.42
VPS39-203ENST00000561797 NRBP2Q9NSY0 501 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 GINS2Q9Y248 185 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 RALGAPA2Q2PPJ7 1873 aa17.66■□□□□ 0.42
VPS39-203ENST00000561797 CHD9Q3L8U1 2897 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 MARCH6O60337 910 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 C22orf31O95567 290 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 MMP1P03956 469 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 OATP04181 439 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 PRKCEQ02156 737 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 PPP4R3AQ6IN85 833 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.65■□□□□ 0.42
VPS39-203ENST00000561797 MICALL1Q8N3F8 863 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 USP38Q8NB14 1042 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 TOP1MTQ969P6 601 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 ZSCAN31Q96LW9 406 aaPredicted RBP17.65■□□□□ 0.42
VPS39-203ENST00000561797 NAP1L4Q99733 375 aaKnown RBP17.65■□□□□ 0.42
VPS39-203ENST00000561797 CDHR5Q9HBB8 845 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 MTUS1Q9ULD2 1270 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 CEP131Q9UPN4 1083 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 INSL6Q9Y581 213 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 ARID2Q68CP9 1835 aa17.65■□□□□ 0.42
VPS39-203ENST00000561797 KIAA1671Q9BY89 1806 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 BTBD18B2RXH4 712 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 GCFC2P16383 781 aaKnown RBP17.64■□□□□ 0.41
VPS39-203ENST00000561797 RBM25P49756 843 aaKnown RBP17.64■□□□□ 0.41
VPS39-203ENST00000561797 GUCY1B3Q02153 619 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 B3GNT9Q6UX72 402 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 DIS3L2Q8IYB7 885 aaKnown RBP17.64■□□□□ 0.41
VPS39-203ENST00000561797 RDM1Q8NG50 284 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 TNFRSF25Q93038 417 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 PADI3Q9ULW8 664 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 SQORQ9Y6N5 450 aa17.64■□□□□ 0.41
VPS39-203ENST00000561797 LINC01553A4QN01 128 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 EML1O00423 815 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 ENPP3O14638 875 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 VTNP04004 478 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 CLCN3P51790 818 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 HTRA4P83105 476 aaPredicted RBP17.63■□□□□ 0.41
VPS39-203ENST00000561797 PAK2Q13177 524 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 TMEM266Q2M3C6 531 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 EFCAB12Q6NXP0 572 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 BANK1Q8NDB2 785 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 FAM20AQ96MK3 541 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 YME1L1Q96TA2 773 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 KCNMB3Q9NPA1 279 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 SEPT9Q9UHD8 586 aaPredicted RBP17.63■□□□□ 0.41
VPS39-203ENST00000561797 KDM3AQ9Y4C1 1321 aa17.63■□□□□ 0.41
VPS39-203ENST00000561797 PRRC2BQ5JSZ5 2229 aaKnown RBP17.62■□□□□ 0.41
VPS39-203ENST00000561797 TMEM150BA6NC51 233 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 MAGEB2O15479 319 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 NFX1Q12986 1120 aaKnown RBP17.62■□□□□ 0.41
VPS39-203ENST00000561797 KIZQ2M2Z5 673 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 MTERF2Q49AM1 385 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 RTN4RL1Q86UN2 441 aaPredicted RBP17.62■□□□□ 0.41
VPS39-203ENST00000561797 LRRC71Q8N4P6 559 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 HAS1Q92839 578 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 TGS1Q96RS0 853 aaKnown RBP17.62■□□□□ 0.41
VPS39-203ENST00000561797 SUGCTQ9HAC7 445 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 VAV3Q9UKW4 847 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 AKT3Q9Y243 479 aa17.62■□□□□ 0.41
VPS39-203ENST00000561797 NOC2LQ9Y3T9 749 aaKnown RBP17.62■□□□□ 0.41
VPS39-203ENST00000561797 FNDC1Q4ZHG4 1894 aaPredicted RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 DDX11L8A8MPP1 907 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 TBX3O15119 743 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 GTPBP6O43824 516 aaPredicted RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 BAG4O95429 457 aaKnown RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 ERVK-21P61565 698 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 GRB10Q13322 594 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 PPP2R5CQ13362 524 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 GDPD5Q8WTR4 605 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 TMEM40Q8WWA1 233 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 LINC01599Q8WXQ3 324 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 C8orf76Q96K31 380 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 OSMRQ99650 979 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 SH2D3AQ9BRG2 576 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 LLPHQ9BRT6 129 aaKnown RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 C17orf80Q9BSJ5 609 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 UPF2Q9HAU5 1272 aaKnown RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 PRDM6Q9NQX0 595 aa17.61■□□□□ 0.41
VPS39-203ENST00000561797 SH2B1Q9NRF2 756 aaPredicted RBP17.61■□□□□ 0.41
VPS39-203ENST00000561797 CDH23Q9H251 3354 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 RPS6KA5O75582 802 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 STBD1O95210 358 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 ATP2B1P20020 1258 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 IBSPP21815 317 aaPredicted RBP17.6■□□□□ 0.41
VPS39-203ENST00000561797 TMOD1P28289 359 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 CRYBB1P53674 252 aaPredicted RBP17.6■□□□□ 0.41
VPS39-203ENST00000561797 PSMC5P62195 406 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 TBC1D8BQ0IIM8 1120 aa17.6■□□□□ 0.41
VPS39-203ENST00000561797 RABEP1Q15276 862 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms