RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	GPRC5B	Q9NZH0	403 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	BTBD7	Q9P203	1132 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435		Q9UFV3	132 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	ATP23	Q9Y6H3	246 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	PABPC1	P11940	636 aa	Known RBP	4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	MC4R	P32245	332 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	ETFB	P38117	255 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	ATXN1	P54253	815 aa	Known RBP	4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	ZC3H6	P61129	1189 aa	Known RBP	4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	HERVK_113	P62684	666 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	RIN1	Q13671	783 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	ARHGAP36	Q6ZRI8	547 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	DPH6	Q7L8W6	267 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	CAPN10	Q9HC96	672 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	ARHGEF4	Q9NR80	690 aa		4.74	□□□□□ -1.65
SPG11-222	ENST00000560435	IQCA1L	A6NCM1	817 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	MAN2B1	O00754	1011 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	WNT9A	O14904	365 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	MPIG6B	O95866	241 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	CD83	Q01151	205 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	FSTL1	Q12841	308 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	IFRD2	Q12894	506 aa	Predicted RBP	4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	TMCO4	Q5TGY1	634 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	NSMF	Q6X4W1	530 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	NAF1	Q96HR8	494 aa	Known RBP	4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	AMN	Q9BXJ7	453 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	OR10A5	Q9H207	317 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	SH3BP1	Q9Y3L3	701 aa		4.73	□□□□□ -1.65
SPG11-222	ENST00000560435	ASXL2	Q76L83	1435 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	BLACE	A4D250	179 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	C4BPA	P04003	597 aa	Known RBP	4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	PTGS2	P35354	604 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	ECE1	P42892	770 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	SCNN1G	P51170	649 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	PAK1	Q13153	545 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	MOGS	Q13724	837 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	ZNF662	Q6ZS27	426 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	VPS37D	Q86XT2	251 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	WDR48	Q8TAF3	677 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	RABGGTA	Q92696	567 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	FAM184B	Q9ULE4	1060 aa		4.72	□□□□□ -1.65
SPG11-222	ENST00000560435	PRAMEF25	A6NGN4	478 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	TRAF5	O00463	557 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	RHOBTB3	O94955	611 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	GC	P02774	474 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	AMY2A	P04746	511 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	AMY2B	P19961	511 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	PROZ	P22891	400 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	CNGB1	Q14028	1251 aa	Predicted RBP	4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	TOB2	Q14106	344 aa	Predicted RBP	4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	CSRP2	Q16527	193 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	GRAMD4	Q6IC98	578 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	LRSAM1	Q6UWE0	723 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435		Q6ZRM9	215 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	PTRH1	Q86Y79	214 aa	Known RBP	4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	MIEF2	Q96C03	454 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	NRDE2	Q9H7Z3	1164 aa		4.71	□□□□□ -1.66
SPG11-222	ENST00000560435	TRAV20	A0A0B4J274	112 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435		A0A1W2PRX2	142 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	CLASP2	O75122	1294 aa	Known RBP	4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	RPS6KA4	O75676	772 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	LMNA	P02545	664 aa	Known RBP	4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	MAN2A2	P49641	1150 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	STAT5B	P51692	787 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	EP400NL	Q6ZTU2	488 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	MRGPRE	Q86SM8	312 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	PRIMA1	Q86XR5	153 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	LPP	Q93052	612 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	FBXW5	Q969U6	566 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	ZNF764	Q96H86	408 aa	Predicted RBP	4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	ZNF408	Q9H9D4	720 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	CATSPERZ	Q9NTU4	200 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	UCKL1	Q9NWZ5	548 aa		4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	CTDP1	Q9Y5B0	961 aa	Predicted RBP	4.7	□□□□□ -1.66
SPG11-222	ENST00000560435	AQP7	O14520	342 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	MAF	O75444	373 aa	Predicted RBP	4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	NUDT3	O95989	172 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	MRPS21	P82921	87 aa	Known RBP	4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	C16orf59	Q7L2K0	433 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	OSTM1	Q86WC4	334 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	CELF2-AS1	Q8N7Q2	184 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	HAS1	Q92839	578 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	LENG9	Q96B70	501 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	VWA7	Q9Y334	891 aa		4.69	□□□□□ -1.66
SPG11-222	ENST00000560435	ZNF561-AS1	K7EIQ3	104 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	PYGM	P11217	842 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	KRT15	P19012	456 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	JAM2	P57087	298 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	ST5	P78524	1137 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	DDR2	Q16832	855 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	MBNL2	Q5VZF2	373 aa	Known RBP	4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	RHOU	Q7L0Q8	258 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	MTDH	Q86UE4	582 aa	Known RBP	4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	GPR150	Q8NGU9	434 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	PCDH19	Q8TAB3	1148 aa		4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	MRRF	Q96E11	262 aa	Known RBP	4.68	□□□□□ -1.66
SPG11-222	ENST00000560435	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.68	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms