RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.36□□□□□ -0.431e-8■■■■■ 35.1
SPG11-216ENST00000559347 TSHZ1Q6ZSZ6 1077 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 CCDC83Q8IWF9 413 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 CKAP2LQ8IYA6 745 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 MAFAQ8NHW3 353 aaPredicted RBP12.36□□□□□ -0.43
SPG11-216ENST00000559347 FAM167AQ96KS9 214 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 BRMS1Q9HCU9 246 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 KCNMB3Q9NPA1 279 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 TRPV2Q9Y5S1 764 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 TTC3P53804 2025 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 SPTBN5Q9NRC6 3674 aaKnown RBP12.36□□□□□ -0.43
SPG11-216ENST00000559347 KDM3AQ9Y4C1 1321 aa12.36□□□□□ -0.43
SPG11-216ENST00000559347 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.35□□□□□ -0.43
SPG11-216ENST00000559347 KIF28PB7ZC32 967 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 M0QZ92 97 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 C22orf31O95567 290 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 AMHP03971 560 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 OATP04181 439 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 KLRC1P26715 233 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 TAP1Q03518 808 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 TMEM62Q0P6H9 643 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 KRT40Q6A162 431 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 MIER3Q7Z3K6 550 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 DIS3L2Q8IYB7 885 aaKnown RBP12.35□□□□□ -0.43
SPG11-216ENST00000559347 MYOCDQ8IZQ8 938 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 RDM1Q8NG50 284 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 GAS2L1Q99501 681 aaPredicted RBP12.35□□□□□ -0.43
SPG11-216ENST00000559347 SH2B1Q9NRF2 756 aaPredicted RBP12.35□□□□□ -0.43
SPG11-216ENST00000559347 VAV3Q9UKW4 847 aa12.35□□□□□ -0.43
SPG11-216ENST00000559347 FNDC1Q4ZHG4 1894 aaPredicted RBP12.35□□□□□ -0.43
SPG11-216ENST00000559347 CCNT1O60563 726 aaKnown RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 HTRA4P83105 476 aaPredicted RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 TRIM29Q14134 588 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 ADGRE1Q14246 886 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 RABEP1Q15276 862 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 IER5Q5VY09 327 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 FAM117BQ6P1L5 589 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 TRMT1LQ7Z2T5 733 aaKnown RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 SPRED2Q7Z698 418 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 ZSCAN31Q96LW9 406 aaPredicted RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 RAD9AQ99638 391 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 NAP1L4Q99733 375 aaKnown RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 LLPHQ9BRT6 129 aaKnown RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 ZBED2Q9BTP6 218 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 AGO3Q9H9G7 860 aaKnown RBP12.34□□□□□ -0.43
SPG11-216ENST00000559347 CEP131Q9UPN4 1083 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 SQORQ9Y6N5 450 aa12.34□□□□□ -0.43
SPG11-216ENST00000559347 EPOPA6NHQ4 379 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 BTBD18B2RXH4 712 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 TBX3O15119 743 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 CD52P31358 61 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 PPP2R5CQ13362 524 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 KIAA0319LQ8IZA0 1049 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 NME8Q8N427 588 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 LINC01465Q8N7H1 131 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 USP38Q8NB14 1042 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 LINC01599Q8WXQ3 324 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 HAS1Q92839 578 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 FAM20AQ96MK3 541 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 CELF4Q9BZC1 486 aaKnown RBP12.33□□□□□ -0.44
SPG11-216ENST00000559347 CERS4Q9HA82 394 aa12.33□□□□□ -0.44
SPG11-216ENST00000559347 LINC01553A4QN01 128 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 EML1O00423 815 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 WNT7AO00755 349 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 CLCN3P51790 818 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 HMGN5P82970 282 aaKnown RBP12.32□□□□□ -0.44
SPG11-216ENST00000559347 SPIRE1Q08AE8 756 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 BANK1Q8NDB2 785 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 SP7Q8TDD2 431 aaPredicted RBP12.32□□□□□ -0.44
SPG11-216ENST00000559347 TMEM40Q8WWA1 233 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 TOP1MTQ969P6 601 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 UPF2Q9HAU5 1272 aaKnown RBP12.32□□□□□ -0.44
SPG11-216ENST00000559347 RC3H2Q9HBD1 1191 aaKnown RBP12.32□□□□□ -0.44
SPG11-216ENST00000559347 SEPT9Q9UHD8 586 aaPredicted RBP12.32□□□□□ -0.44
SPG11-216ENST00000559347 INSL6Q9Y581 213 aa12.32□□□□□ -0.44
SPG11-216ENST00000559347 TMEM150BA6NC51 233 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 ST18O60284 1047 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 STBD1O95210 358 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 CD2BP2O95400 341 aaKnown RBP12.31□□□□□ -0.44
SPG11-216ENST00000559347 VTNP04004 478 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 GUCY1B3Q02153 619 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 PAK2Q13177 524 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 TARBP2Q15633 366 aaKnown RBP12.31□□□□□ -0.44
SPG11-216ENST00000559347 LRRC71Q8N4P6 559 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 METTL13Q8N6R0 699 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 SLC17A8Q8NDX2 589 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 ARNTL2Q8WYA1 636 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 C8orf76Q96K31 380 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 TBC1D32Q96NH3 1257 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 CEP89Q96ST8 783 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 PPP1R16BQ96T49 567 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 FTHL17Q9BXU8 183 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 CDHR5Q9HBB8 845 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 PADI3Q9ULW8 664 aa12.31□□□□□ -0.44
SPG11-216ENST00000559347 PRRC2BQ5JSZ5 2229 aaKnown RBP12.31□□□□□ -0.44
SPG11-216ENST00000559347 PLXNA4Q9HCM2 1894 aa12.3□□□□□ -0.44
SPG11-216ENST00000559347 RFXAPO00287 272 aa12.3□□□□□ -0.44
SPG11-216ENST00000559347 MAGEB2O15479 319 aa12.3□□□□□ -0.44
SPG11-216ENST00000559347 NEMFO60524 1076 aa12.3□□□□□ -0.44
SPG11-216ENST00000559347 UPP2O95045 317 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms