RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PHKBQ93100 1093 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 CD320Q9NPF0 282 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 TCEAL9Q9UHQ7 104 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 LRFN2Q9ULH4 789 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 FAM50BQ9Y247 325 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 MRPL42Q9Y6G3 142 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 ADAMTS3O15072 1205 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 RPS6KA5O75582 802 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 MMP1P03956 469 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 ATP4AP20648 1035 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 IBSPP21815 317 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 PSMA5P28066 241 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 COL19A1Q14993 1142 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 PRR16Q569H4 304 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 NAALADL2Q58DX5 795 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 TMEM31Q5JXX7 168 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 ODR4Q5SWX8 454 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 ZNF746Q6NUN9 644 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 FAM43BQ6ZT52 329 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 TRMT1LQ7Z2T5 733 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 SMAP1Q8IYB5 467 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 KIAA0319LQ8IZA0 1049 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 CRIPAKQ8N1N5 446 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 CCDC148Q8NFR7 591 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 BBXQ8WY36 941 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 P2RX5Q93086 422 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 CCDC136Q96JN2 1154 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 LRFN3Q9BTN0 628 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 RNF26Q9BY78 433 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 AGXT2Q9BYV1 514 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 TMX1Q9H3N1 280 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 ALG13Q9NP73 1137 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 PLXNA4Q9HCM2 1894 aa12.56□□□□□ -0.4
CCDC88C-213ENST00000557455 DENND3A2RUS2 1198 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 ZBTB42B2RXF5 422 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PI4K2BG5E9Z4 385 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PPFIA3O75145 1194 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 REC8O95072 547 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 CSPG5O95196 566 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PSAPP07602 524 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 SARSP49591 514 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 CCT2P78371 535 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 HYAL1Q12794 435 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 NTRK3Q16288 839 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 RASGRP4Q8TDF6 673 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 SLC26A6Q9BXS9 759 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 CDHR5Q9HBB8 845 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 RNF216Q9NWF9 866 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 GABBR1Q9UBS5 961 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PLAGL2Q9UPG8 496 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 CEP131Q9UPN4 1083 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 NOC2LQ9Y3T9 749 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 SAMM50Q9Y512 469 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PCDHB7Q9Y5E2 793 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 PCDHA10Q9Y5I2 948 aa12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 MAFBQ9Y5Q3 323 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-213ENST00000557455 GPR182O15218 404 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 GPR37L1O60883 481 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 C22orf31O95567 290 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 CIITAP33076 1130 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 LTBRP36941 435 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 GATMP50440 423 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 CRYBB1P53674 252 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 KIZQ2M2Z5 673 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 CTC1Q2NKJ3 1217 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 METTL13Q8N6R0 699 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 KLHL23Q8NBE8 558 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 TMEM40Q8WWA1 233 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 PPP2R3CQ969Q6 453 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 PPP1R16BQ96T49 567 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 ADAM2Q99965 735 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 IGFLR1Q9H665 355 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 ERVK-5Q9HDB9 667 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 C1orf112Q9NSG2 853 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 VPS54Q9P1Q0 977 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 ST3GAL5Q9UNP4 418 aa12.54□□□□□ -0.4
CCDC88C-213ENST00000557455 FAM86C2PA6NEL3 165 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 WDR64B1ANS9 1081 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 MGEA5O60502 916 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 VTNP04004 478 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 ITGB1P05556 798 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 IFNAR1P17181 557 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 PDIA3P30101 505 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 USP11P51784 963 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 NLRP5P59047 1200 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 CAMK1Q14012 370 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 SPOUT1Q5T280 376 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 SLC24A5Q71RS6 500 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 SPPL3Q8TCT6 385 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 FAM167AQ96KS9 214 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 OSMRQ99650 979 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 NCOA5Q9HCD5 579 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 RGS18Q9NS28 235 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 PRKAG3Q9UGI9 489 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 HCN4Q9Y3Q4 1203 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 C5orf42Q9H799 3197 aa12.53□□□□□ -0.4
CCDC88C-213ENST00000557455 TBKBP1A7MCY6 615 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 MAGEB2O15479 319 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 GPR32O75388 356 aa12.52□□□□□ -0.41
CCDC88C-213ENST00000557455 ALADP13716 330 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms