RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MYOCDQ8IZQ8 938 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 LINC01465Q8N7H1 131 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 OXER1Q8TDS5 423 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 ZBTB10Q96DT7 871 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 FAM49AQ9H0Q0 323 aaPredicted RBP18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 GJB4Q9NTQ9 266 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 SAMM50Q9Y512 469 aa18.1■□□□□ 0.49
CCDC88C-209ENST00000554872 LINC01553A4QN01 128 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 SLC37A4O43826 429 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 PRKCEQ02156 737 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 LETM2Q2VYF4 491 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 TMCO2Q7Z6W1 182 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 CKAP2LQ8IYA6 745 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 ZSCAN31Q96LW9 406 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 SAMD11Q96NU1 681 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 UIMC1Q96RL1 719 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 TGS1Q96RS0 853 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 AGO3Q9H9G7 860 aaKnown RBP18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 SH2B1Q9NRF2 756 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 NRBP2Q9NSY0 501 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 LMCD1Q9NZU5 365 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 VAV3Q9UKW4 847 aa18.09■□□□□ 0.49
CCDC88C-209ENST00000554872 MYO9BQ13459 2157 aa18.08■□□□□ 0.49
CCDC88C-209ENST00000554872 TARBP2Q15633 366 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 PIK3AP1Q6ZUJ8 805 aa18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 NIFKQ9BYG3 293 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 RC3H2Q9HBD1 1191 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 COL4A4P53420 1690 aaPredicted RBP18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 TTC3P53804 2025 aa18.08■□□□□ 0.48
CCDC88C-209ENST00000554872 EPOPA6NHQ4 379 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 JAK2O60674 1132 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 UGCGQ16739 394 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 XKR3Q5GH77 459 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 EARS2Q5JPH6 523 aaKnown RBP18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 ODR4Q5SWX8 454 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 MIER3Q7Z3K6 550 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 CRIPAKQ8N1N5 446 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 TSPYL2Q9H2G4 693 aaPredicted RBP18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 PADI3Q9ULW8 664 aa18.07■□□□□ 0.48
CCDC88C-209ENST00000554872 REV3LO60673 3130 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 ENPP3O14638 875 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 CHMP2AO43633 222 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 CCNT1O60563 726 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 LPXNO60711 386 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 STBD1O95210 358 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 CD52P31358 61 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 CRYBB1P53674 252 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 HMGN5P82970 282 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 PAK2Q13177 524 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 NR5A1Q13285 461 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 TRIM29Q14134 588 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 SLFN12Q8IYM2 578 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 LINC01599Q8WXQ3 324 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 ARNTL2Q8WYA1 636 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 HAS1Q92839 578 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 GJA10Q969M2 543 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 CEP89Q96ST8 783 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 PPME1Q9Y570 386 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 MTCH2Q9Y6C9 303 aa18.06■□□□□ 0.48
CCDC88C-209ENST00000554872 GTPBP6O43824 516 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 DKC1O60832 514 aaKnown RBP eCLIP18.05■□□□□ 0.485e-9■■■■■ 40.8
CCDC88C-209ENST00000554872 GPR32O75388 356 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 TMOD1P28289 359 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 PSMC5P62195 406 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 SPIRE1Q08AE8 756 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 KRT40Q6A162 431 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 DIS3L2Q8IYB7 885 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 YME1L1Q96TA2 773 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 ERVK-5Q9HDB9 667 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 RALGAPA2Q2PPJ7 1873 aa18.05■□□□□ 0.48
CCDC88C-209ENST00000554872 IGKV6-21A0A0C4DH24 114 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 IGFBP4P22692 258 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 TMEM62Q0P6H9 643 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 GRB10Q13322 594 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 RABEP1Q15276 862 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 SPRED2Q7Z698 418 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 NPAS4Q8IUM7 802 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 TMEM40Q8WWA1 233 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 ZNF689Q96CS4 500 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 MAP7D2Q96T17 732 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 RNF216Q9NWF9 866 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 EVPLQ92817 2033 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 CUL9Q8IWT3 2517 aa18.04■□□□□ 0.48
CCDC88C-209ENST00000554872 ADGRA3Q8IWK6 1321 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 VCANP13611 3396 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 BTBD18B2RXH4 712 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 EML1O00423 815 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 GPR182O15218 404 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 QARSP47897 775 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 CDC42EP1Q00587 391 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 TBC1D8BQ0IIM8 1120 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 ORC2Q13416 577 aaPredicted RBP18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 EFCAB12Q6NXP0 572 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 FAM117BQ6P1L5 589 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 RTN4RL1Q86UN2 441 aaPredicted RBP18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 CCDC83Q8IWF9 413 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 METTL13Q8N6R0 699 aa18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 CLP1Q92989 425 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-209ENST00000554872 ADAMTS10Q9H324 1103 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms