RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 APBB2Q92870 758 aa11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 ZSCAN31Q96LW9 406 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 LLPHQ9BRT6 129 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 IFIH1Q9BYX4 1025 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 PRDM12Q9H4Q4 367 aa11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 AGO3Q9H9G7 860 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 TCEAL9Q9UHQ7 104 aa11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 VAV3Q9UKW4 847 aa11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 SAMM50Q9Y512 469 aa11.6□□□□□ -0.55
CCDC88C-206ENST00000553437 KIF28PB7ZC32 967 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 EML1O00423 815 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 TLL1O43897 1013 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 CCNT1O60563 726 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 STBD1O95210 358 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 FOSL2P15408 326 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 TMEM62Q0P6H9 643 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 RABEP1Q15276 862 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 IER5Q5VY09 327 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 CKAP2LQ8IYA6 745 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 DIS3L2Q8IYB7 885 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 FAM20AQ96MK3 541 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 RAD9AQ99638 391 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 CELF4Q9BZC1 486 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 BRMS1Q9HCU9 246 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 SH2B1Q9NRF2 756 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 TRPV2Q9Y5S1 764 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 SQORQ9Y6N5 450 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 KDM3AQ9Y4C1 1321 aa11.59□□□□□ -0.55
CCDC88C-206ENST00000553437 EPOPA6NHQ4 379 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 WNT7AO00755 349 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TBX3O15119 743 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 AMHP03971 560 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 OATP04181 439 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 FOSBP53539 338 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 HTRA4P83105 476 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 PRKCEQ02156 737 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 PPP2R5CQ13362 524 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TARBP2Q15633 366 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TSHZ1Q6ZSZ6 1077 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TRMT1LQ7Z2T5 733 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 MIER3Q7Z3K6 550 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 SPRED2Q7Z698 418 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 MYOCDQ8IZQ8 938 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 LINC01465Q8N7H1 131 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 MAFAQ8NHW3 353 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TOP1MTQ969P6 601 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 FAM167AQ96KS9 214 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 CEP89Q96ST8 783 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 NAP1L4Q99733 375 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 CDHR5Q9HBB8 845 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 NRBP2Q9NSY0 501 aa11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 TRIP12Q14669 1992 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-206ENST00000553437 ENPP3O14638 875 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 CD2BP2O95400 341 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 CD52P31358 61 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 SPIRE1Q08AE8 756 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 TRIM29Q14134 588 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 FAM117BQ6P1L5 589 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 RTN4RL1Q86UN2 441 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 USP38Q8NB14 1042 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 LINC01599Q8WXQ3 324 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 TBC1D32Q96NH3 1257 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 ZBED2Q9BTP6 218 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 NIFKQ9BYG3 293 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 CERS4Q9HA82 394 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 CEP131Q9UPN4 1083 aa11.57□□□□□ -0.56
CCDC88C-206ENST00000553437 LINC01553A4QN01 128 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 TMEM150BA6NC51 233 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 M0QZ92 97 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 RFXAPO00287 272 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 TRANK1O15050 2925 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 MAGEB2O15479 319 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 GPR32O75388 356 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 HMGN5P82970 282 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 GUCY1B3Q02153 619 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 XKR3Q5GH77 459 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 CRIPAKQ8N1N5 446 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 BANK1Q8NDB2 785 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 FBXO18Q8NFZ0 1043 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 TMEM40Q8WWA1 233 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 C8orf76Q96K31 380 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 GAS2L1Q99501 681 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 TMX1Q9H3N1 280 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 PRDM6Q9NQX0 595 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 WRAP73Q9P2S5 460 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 PADI3Q9ULW8 664 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 INSL6Q9Y581 213 aa11.56□□□□□ -0.56
CCDC88C-206ENST00000553437 IGKV6-21A0A0C4DH24 114 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 LPXNO60711 386 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 VTNP04004 478 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 POU3F3P20264 500 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 CLCN3P51790 818 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 CRYBB1P53674 252 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 ERVK-21P61565 698 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 PSMC5P62195 406 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 EPHA7Q15375 998 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 TMEM266Q2M3C6 531 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 EFCAB12Q6NXP0 572 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 ANO5Q75V66 913 aa11.55□□□□□ -0.56
CCDC88C-206ENST00000553437 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms