RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 PRKCEQ02156 737 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 ORC2Q13416 577 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-204ENST00000553324 EPHA7Q15375 998 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 FBXO47Q5MNV8 452 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 TSHZ1Q6ZSZ6 1077 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 POTEDQ86YR6 584 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 KIAA0319LQ8IZA0 1049 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 METTL13Q8N6R0 699 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 CDX2Q99626 313 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-204ENST00000553324 RAD9AQ99638 391 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 NIFKQ9BYG3 293 aaKnown RBP17.24■□□□□ 0.35
SHMT2-204ENST00000553324 VAV3Q9UKW4 847 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 KAT6AQ92794 2004 aa17.24■□□□□ 0.35
SHMT2-204ENST00000553324 FAM205CA6NFA0 338 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 GJB5O95377 273 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 C22orf31O95567 290 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 GHRP10912 638 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 TRAPPC10P48553 1259 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 LPIN1Q14693 890 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 EXOC8Q8IYI6 725 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 ZBTB10Q96DT7 871 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 GUCD1Q96NT3 240 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 JPH2Q9BR39 696 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-204ENST00000553324 FTHL17Q9BXU8 183 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 NKX2-4Q9H2Z4 354 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 PPME1Q9Y570 386 aa17.23■□□□□ 0.35
SHMT2-204ENST00000553324 DDX11L8A8MPP1 907 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 TBC1D8BQ0IIM8 1120 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 UGCGQ16739 394 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 PPP2R2DQ66LE6 453 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 EFCAB12Q6NXP0 572 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 OTUD6AQ7L8S5 288 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 NOSTRINQ8IVI9 506 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 MAP7D2Q96T17 732 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 NOL7Q9UMY1 257 aaKnown RBP17.22■□□□□ 0.35
SHMT2-204ENST00000553324 YBX2Q9Y2T7 364 aaKnown RBP17.22■□□□□ 0.35
SHMT2-204ENST00000553324 INSL6Q9Y581 213 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 TANC1Q9C0D5 1861 aa17.22■□□□□ 0.35
SHMT2-204ENST00000553324 EML1O00423 815 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 U2AF2P26368 475 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 DNM2P50570 870 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 CRYBB1P53674 252 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 DEFB103AP81534 67 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 TMEM62Q0P6H9 643 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 MKRN4PQ13434 485 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 GRIN2CQ14957 1233 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 TARBP2Q15633 366 aaKnown RBP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 TCTN1Q2MV58 587 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.21■□□□□ 0.354e-7■□□□□ 9.3
SHMT2-204ENST00000553324 C4orf19Q8IY42 314 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 MYOCDQ8IZQ8 938 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 TOP1MTQ969P6 601 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 MTMR9Q96QG7 549 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 ZSWIM4Q9H7M6 989 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 TTC12Q9H892 705 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 SEPT9Q9UHD8 586 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-204ENST00000553324 SCN5AQ14524 2016 aa17.21■□□□□ 0.35
SHMT2-204ENST00000553324 GPR182O15218 404 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 CD2BP2O95400 341 aaKnown RBP17.2■□□□□ 0.34
SHMT2-204ENST00000553324 CA3P07451 260 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 MYOGP15173 224 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 ATP2B1P20020 1258 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 MCM7P33993 719 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 TXKP42681 527 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 PAK2Q13177 524 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 NCAPH2Q6IBW4 605 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 BANK1Q8NDB2 785 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 NEK9Q8TD19 979 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 GAS2L1Q99501 681 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-204ENST00000553324 SUGCTQ9HAC7 445 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 RNF216Q9NWF9 866 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-204ENST00000553324 SMC3Q9UQE7 1217 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 AKT3Q9Y243 479 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 GINS2Q9Y248 185 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 TET1Q8NFU7 2136 aa17.2■□□□□ 0.34
SHMT2-204ENST00000553324 H3BQV1 296 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 ENPP3O14638 875 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 RPS6KA5O75582 802 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 STBD1O95210 358 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 GJB2P29033 226 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 CD52P31358 61 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 SPIRE1Q08AE8 756 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 MTERF2Q49AM1 385 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 OSBPL7Q9BZF2 842 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 AGO3Q9H9G7 860 aaKnown RBP17.19■□□□□ 0.34
SHMT2-204ENST00000553324 PADI3Q9ULW8 664 aa17.19■□□□□ 0.34
SHMT2-204ENST00000553324 CDH23Q9H251 3354 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-204ENST00000553324 SLITRK3O94933 977 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 FOSL2P15408 326 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 TTC38Q5R3I4 469 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 ANO5Q75V66 913 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 LINC01465Q8N7H1 131 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 MYLIPQ8WY64 445 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 HSD17B14Q9BPX1 270 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 EIF2AK1Q9BQI3 630 aaKnown RBP17.18■□□□□ 0.34
SHMT2-204ENST00000553324 LXNQ9BS40 222 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 CYP26B1Q9NR63 512 aa17.18■□□□□ 0.34
SHMT2-204ENST00000553324 IGKV6-21A0A0C4DH24 114 aa17.17■□□□□ 0.34
SHMT2-204ENST00000553324 GPR32O75388 356 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms