RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 XPNPEP3Q9NQH7 507 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 ADD3Q9UEY8 706 aaKnown RBP8.46□□□□□ -1.06
LIMA1-216ENST00000552909 SEC63Q9UGP8 760 aaKnown RBP8.46□□□□□ -1.06
LIMA1-216ENST00000552909 FAM184BQ9ULE4 1060 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 HPCAL4Q9UM19 191 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 CLIC4Q9Y696 253 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 CAPN7Q9Y6W3 813 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 MYADML2A6NDP7 307 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 DEXIO95424 95 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 COL6A1P12109 1028 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 EIF2AK2P19525 551 aaKnown RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 SCP2P22307 547 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 CMA1P23946 247 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 EDNRBP24530 442 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 MTF1Q14872 753 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 LRRC41Q15345 812 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 KRT40Q6A162 431 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 NECAB2Q7Z6G3 386 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 ANKLE1Q8NAG6 615 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 DNERQ8NFT8 737 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 MIEF2Q96C03 454 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 NAPGQ99747 312 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 RNF26Q9BY78 433 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 ADGRG1Q9Y653 693 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 ATXN2Q99700 1313 aaKnown RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 STK36Q9NRP7 1315 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 ALPK3Q96L96 1907 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 GOLGA6CA6NDK9 693 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 SOWAHDA6NJG2 315 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 MEIS2O14770 477 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 CHUKO15111 745 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 ADAMTS4O75173 837 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 GOLGA6DP0CG33 693 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 SMPD1P17405 629 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 GHRHRQ02643 423 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 PPFIA1Q13136 1202 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 STIM1Q13586 685 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 PKN1Q16512 942 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 HEATR3Q7Z4Q2 680 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 IL31RAQ8NI17 732 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 BCAS4Q8TDM0 211 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 FERMT2Q96AC1 680 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 PANX2Q96RD6 677 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 CRACR2AQ9BSW2 395 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 NAA15Q9BXJ9 866 aaKnown RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 SENP6Q9GZR1 1112 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-216ENST00000552909 PXMP2Q9NR77 195 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 GOLGA6AQ9NYA3 693 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 MCM8Q9UJA3 840 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 KCNJ14Q9UNX9 436 aa8.45□□□□□ -1.06
LIMA1-216ENST00000552909 LRRC37A2A6NM11 1700 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 SYNRGQ9UMZ2 1314 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 AKR1B15C9JRZ8 316 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 GCOM1H8Y6P7 765 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 DNM1LO00429 736 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 EIF3HO15372 352 aaKnown RBP eCLIP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 DUSP11O75319 330 aaKnown RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 KIAA0754O94854 1291 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 POLR2MP0CAP2 368 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 SYKP43405 635 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 ATN1P54259 1190 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 TNFAIP2Q03169 654 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 PDE4DQ08499 809 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 ARHGEF16Q5VV41 709 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 B4GALNT4Q76KP1 1039 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 SLC35F6Q8N357 371 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 NOA1Q8NC60 698 aaKnown RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 NSUN6Q8TEA1 469 aaKnown RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 COG1Q8WTW3 980 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 DPF3Q92784 378 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 CAPS2Q9BXY5 557 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 C11orf49Q9H6J7 331 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 GNEQ9Y223 722 aaKnown RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 TMCO5BA8MYB1 307 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 ADAMTS3O15072 1205 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 RGS20O76081 388 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 FSBPO95073 299 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 ARIH2O95376 493 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 NR3C2P08235 984 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 C6orf222P0C671 652 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 GGCXP38435 758 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 BEX3Q00994 111 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 UBE2SQ16763 222 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 LRRC26Q2I0M4 334 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 BRAPQ7Z569 592 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 SPATS2Q86XZ4 545 aaKnown RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 ARRDC4Q8NCT1 418 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 KLHDC9Q8NEP7 349 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 N4BP2L2Q92802 583 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-216ENST00000552909 COPS5Q92905 334 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 PDCD2LQ9BRP1 358 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 WDR11Q9BZH6 1224 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 PSTPIP2Q9H939 334 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 VTA1Q9NP79 307 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 VPS54Q9P1Q0 977 aa8.44□□□□□ -1.06
LIMA1-216ENST00000552909 DYNC1LI2O43237 492 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 MYCLP12524 364 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 GCFC2P16383 781 aaKnown RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 XBP1P17861 261 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 FNTAP49354 379 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms