RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FOSP01100 380 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 RPA1P27694 616 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SMARCA1P28370 1054 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PAFAH1B1P43034 410 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 KCNJ6P48051 423 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PTK2Q05397 1052 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 LRRC63Q05C16 580 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF211Q13398 564 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 FAM182AQ5T1J6 154 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 KCTD16Q68DU8 428 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SEPT14Q6ZU15 432 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MOB2Q70IA6 237 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 UHMK1Q8TAS1 419 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 KRT12Q99456 494 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CBWD1Q9BRT8 395 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 TEKT3Q9BXF9 490 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 EHD4Q9H223 541 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MORC2Q9Y6X9 1032 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 hCG_1984214I3L0E3 225 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ATMINO43313 823 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 AFPP02771 609 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MYL1P05976 194 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ASNSP08243 561 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 HOXD13P35453 343 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SREBF1P36956 1147 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 DLG4P78352 724 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 AP3B2Q13367 1082 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CT47A1Q5JQC4 288 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ZFYVE27Q5T4F4 411 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 RSRC2Q7L4I2 434 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 OTOP1Q7RTM1 612 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CDR2LQ86X02 465 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 DDX42Q86XP3 938 aaKnown RBP eCLIP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 RTKN2Q8IZC4 609 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF713Q8N859 430 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SYT2Q8N9I0 419 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 TAF4BQ92750 862 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ALS2CR12Q96Q35 445 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ERGIC2Q96RQ1 377 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CAMKK2Q96RR4 588 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MAGEF1Q9HAY2 307 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PARVGQ9HBI0 331 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 TOPORSQ9NS56 1045 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 BCCIPQ9P287 314 aaKnown RBP eCLIP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 RGS17Q9UGC6 210 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PLAGL2Q9UPG8 496 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SLX4Q8IY92 1834 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ADAMTSL1Q8N6G6 1762 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 LRRIQ3A6PVS8 624 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 EIF3CLB5ME19 914 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CALUO43852 315 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 NOL4O94818 638 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MARK3P27448 753 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 NF2P35240 595 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SSR1P43307 286 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PRELPP51888 382 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 MAP2K1Q02750 393 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 CASP8Q14790 479 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 UGCGQ16739 394 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SPDYE2Q495Y8 402 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SNRNP48Q6IEG0 339 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ALKBH5Q6P6C2 394 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF571Q7Z3V5 609 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PPM1KQ8N3J5 372 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 BAP1Q92560 729 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 NOX5Q96PH1 765 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 EIF3CQ99613 913 aaKnown RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PI4K2AQ9BTU6 479 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 TTYH3Q9C0H2 523 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 FAM107BQ9H098 131 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 UBE2TQ9NPD8 197 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-215ENST00000552823 PLCB1Q9NQ66 1216 aa6.12□□□□□ -1.43
LIMA1-215ENST00000552823 SMIM23A6NLE4 172 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 KIF20AO95235 890 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 UCHL3P15374 230 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 GUCY2DQ02846 1103 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 SPIRE1Q08AE8 756 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 MTMR1Q13613 665 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 TERF2Q15554 542 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 MTERF2Q49AM1 385 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 SWSAP1Q6NVH7 229 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 TRIM59Q8IWR1 403 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 SMAP1Q8IYB5 467 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 FUT8Q9BYC5 575 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 DPH5Q9H2P9 285 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 PICK1Q9NRD5 415 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 RNF146Q9NTX7 359 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 RBM12Q9NTZ6 932 aaKnown RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 DNAJC12Q9UKB3 198 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 FRMD4BQ9Y2L6 1034 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 SCN7AQ01118 1682 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 SCN9AQ15858 1988 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 COL5A3P25940 1745 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 CEP350Q5VT06 3117 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 EYA4O95677 639 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 VIL1P09327 827 aaKnown RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 PON1P27169 355 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 DRAP1Q14919 205 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 TNIP1Q15025 636 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 WHAMMP3Q1A5X7 153 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms