RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 HK2P52789 917 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 MRPS9P82933 396 aaKnown RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 CYP4F8P98187 520 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ZNF267Q14586 743 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 SAFBQ15424 915 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 LONRF3Q496Y0 759 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 BICRALQ6AI39 1079 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 CCDC62Q6P9F0 684 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 RTN4RL1Q86UN2 441 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 OXR1Q8N573 874 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ASB15Q8WXK1 588 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ERCC4Q92889 916 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 FOXRED1Q96CU9 486 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 GBP4Q96PP9 640 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 SLC2A13Q96QE2 648 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 POFUT1Q9H488 388 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 DDX21Q9NR30 783 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 BSDC1Q9NW68 430 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 PALD1Q9ULE6 856 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 SIT1Q9Y3P8 196 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-210ENST00000552045 UBA6A0AVT1 1052 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-210ENST00000552045 PRSS38A1L453 326 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 FITM1A5D6W6 292 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 APAF1O14727 1248 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 EFEMP2O95967 443 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 POU2F2P09086 479 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 MTHFD2P13995 350 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 SAFB2Q14151 953 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIMA1-210ENST00000552045 PITRM1Q5JRX3 1037 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 ATAT1Q5SQI0 421 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 ZBTB41Q5SVQ8 909 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 CHST15Q7LFX5 561 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-210ENST00000552045 MILR1Q7Z6M3 343 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 HPS3Q969F9 1004 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 RAX2Q96IS3 184 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 RNF38Q9H0F5 515 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 WNT8AQ9H1J5 351 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 TUBD1Q9UJT1 453 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 DNM3Q9UQ16 869 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 SLC5A6Q9Y289 635 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 PTPN22Q9Y2R2 807 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 ASB1Q9Y576 335 aa7.88□□□□□ -1.15
LIMA1-210ENST00000552045 GOLGA6L22H0YM25 854 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 SLC5A3P53794 718 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 GRIN1Q05586 938 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 MORC3Q14149 939 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 NR0B2Q15466 257 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 TTC38Q5R3I4 469 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 TIGD7Q6NT04 549 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-210ENST00000552045 LILRA6Q6PI73 481 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 SPRED2Q7Z698 418 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 CATIPQ7Z7H3 387 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 WFDC3Q8IUB2 231 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 CILP2Q8IUL8 1156 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 TTLL11Q8NHH1 800 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 E2F7Q96AV8 911 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 IL17RAQ96F46 866 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 TUBGCP5Q96RT8 1024 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 ARPC5LQ9BPX5 153 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 MYL10Q9BUA6 226 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 GTPBP4Q9BZE4 634 aaKnown RBP7.87□□□□□ -1.15
LIMA1-210ENST00000552045 FAM50BQ9Y247 325 aa7.87□□□□□ -1.15
LIMA1-210ENST00000552045 CREB3O43889 395 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 PRPF6O94906 941 aaKnown RBP7.86□□□□□ -1.15
LIMA1-210ENST00000552045 LPLP06858 475 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 USP14P54578 494 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 KIF23Q02241 960 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-210ENST00000552045 MUM1Q2TAK8 710 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 PAN2Q504Q3 1202 aaKnown RBP7.86□□□□□ -1.15
LIMA1-210ENST00000552045 ARRDC4Q8NCT1 418 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 HIPK4Q8NE63 616 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 ZNF526Q8TF50 670 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-210ENST00000552045 AUTS2Q8WXX7 1259 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 FERMT2Q96AC1 680 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 CCDC120Q96HB5 630 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 MAML3Q96JK9 1138 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 ACO2Q99798 780 aaKnown RBP7.86□□□□□ -1.15
LIMA1-210ENST00000552045 SERPINB13Q9UIV8 391 aa7.86□□□□□ -1.15
LIMA1-210ENST00000552045 IFRD1O00458 451 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-210ENST00000552045 SRGAP3O43295 1099 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 PSPNO60542 156 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 FAHP16930 419 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 ZNF574Q6ZN55 896 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-210ENST00000552045 NLRX1Q86UT6 975 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 FAM43AQ8N2R8 423 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 DIS3LQ8TF46 1054 aaKnown RBP7.85□□□□□ -1.15
LIMA1-210ENST00000552045 PEX11GQ96HA9 241 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 FAM193BQ96PV7 902 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-210ENST00000552045 SEMA6BQ9H3T3 888 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 PRDM12Q9H4Q4 367 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 RXFP1Q9HBX9 757 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 PRDM7Q9NQW5 492 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 NUDT5Q9UKK9 219 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 TMPRSS11EQ9UL52 423 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 NUMBLQ9Y6R0 609 aa7.85□□□□□ -1.15
LIMA1-210ENST00000552045 A6NNZ2 444 aa7.84□□□□□ -1.15
LIMA1-210ENST00000552045 APOL3O95236 402 aa7.84□□□□□ -1.15
LIMA1-210ENST00000552045 PRLP01236 227 aa7.84□□□□□ -1.15
LIMA1-210ENST00000552045 DBHP09172 617 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms