RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PPM1EQ8WY54 764 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 CCDC17Q96LX7 622 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 AMNQ9BXJ7 453 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 TAF1DQ9H5J8 278 aaPredicted RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 MYO3BQ8WXR4 1341 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 HPDP32754 393 aaPredicted RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 SEC24CP53992 1094 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 FBXO11Q86XK2 927 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 SCFD2Q8WU76 684 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 EIF2AK1Q9BQI3 630 aaKnown RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 FAM198AQ9UFP1 575 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 AMACRQ9UHK6 382 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 SUGT1Q9Y2Z0 365 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 NOC2LQ9Y3T9 749 aaKnown RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 OPLAHO14841 1288 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 TGFB1I1O43294 461 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 ZNF76P36508 570 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 UBXN2AP68543 259 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 HHIPL2Q6UWX4 724 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 PEX26Q7Z412 305 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 EFCAB13Q8IY85 973 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 DCAF4Q8WV16 495 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 OSGEPQ9NPF4 335 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 TYW1Q9NV66 732 aaKnown RBP17.25■□□□□ 0.35
LDLR-204ENST00000545707 VAV3Q9UKW4 847 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 BCS1LQ9Y276 419 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 MYH4Q9Y623 1939 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 FOCADQ5VW36 1801 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 KRIT1O00522 736 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 TBCAO75347 108 aaKnown RBP17.25■□□□□ 0.35
LDLR-204ENST00000545707 FLOT1O75955 427 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 NDUFB10O96000 172 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 ZBTB48P10074 688 aaPredicted RBP17.25■□□□□ 0.35
LDLR-204ENST00000545707 NR1D1P20393 614 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 AP3B2Q13367 1082 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 Q4G0T1 1027 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 NAA35Q5VZE5 725 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 DAAM2Q86T65 1068 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 TADA2BQ86TJ2 420 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 TPH2Q8IWU9 490 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 MREGQ8N565 214 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 WHAMMQ8TF30 809 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 MKL1Q969V6 931 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 CELF4Q9BZC1 486 aaKnown RBP17.25■□□□□ 0.35
LDLR-204ENST00000545707 GLT8D2Q9H1C3 349 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 NYAP2Q9P242 653 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 RABGAP1Q9Y3P9 1069 aa17.25■□□□□ 0.35
LDLR-204ENST00000545707 H2AFZP0C0S5 128 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 LSP1P33241 339 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 HSD17B3P37058 310 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 UAP1Q16222 522 aaPredicted RBP17.24■□□□□ 0.35
LDLR-204ENST00000545707 RINT1Q6NUQ1 792 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 H2AFVQ71UI9 128 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 ADAT2Q7Z6V5 191 aaKnown RBP17.24■□□□□ 0.35
LDLR-204ENST00000545707 GLYCTKQ8IVS8 523 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 FAM107BQ9H098 131 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 ISCUQ9H1K1 167 aa17.24■□□□□ 0.35
LDLR-204ENST00000545707 BZW2Q9Y6E2 419 aaKnown RBP17.24■□□□□ 0.35
LDLR-204ENST00000545707 A0A087WUV0 522 aaPredicted RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 KLRG2A4D1S0 409 aaPredicted RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 BTNL10A8MVZ5 291 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 ABCB4P21439 1286 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 JAM2P57087 298 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 KDM7AQ6ZMT4 941 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 MYCT1Q8N699 235 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 LNX1Q8TBB1 728 aaPredicted RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 ATP6V1G3Q96LB4 118 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 NR2E1Q9Y466 385 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 PGRMC1O00264 195 aaKnown RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 DAPK3O43293 454 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 EVI5O60447 810 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 COPB2P35606 906 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 SREBF1P36956 1147 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 HSPA9P38646 679 aaKnown RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 PRKCIP41743 596 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 GALCP54803 685 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 C10orf76Q5T2E6 689 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 ACTRT1Q8TDG2 376 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 PBKQ96KB5 322 aa17.23■□□□□ 0.35
LDLR-204ENST00000545707 ZNF219Q9P2Y4 722 aaPredicted RBP17.23■□□□□ 0.35
LDLR-204ENST00000545707 TTI1O43156 1089 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 TOM1O60784 492 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 SYDE2Q5VT97 1194 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 SAMD1Q6SPF0 538 aaPredicted RBP17.22■□□□□ 0.35
LDLR-204ENST00000545707 MOXD1Q6UVY6 613 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.22■□□□□ 0.355e-8■□□□□ 11.1
LDLR-204ENST00000545707 TRIM31Q9BZY9 425 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 BCCIPQ9P287 314 aaKnown RBP eCLIP17.22■□□□□ 0.35
LDLR-204ENST00000545707 PI4KBQ9UBF8 816 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 TRIM49P0CI25 452 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 TRIM49CP0CI26 452 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 RPL13P26373 211 aaKnown RBP17.22■□□□□ 0.35
LDLR-204ENST00000545707 FAM186BQ8IYM0 893 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 RDH13Q8NBN7 331 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 KAT2BQ92831 832 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 DYDC2Q96IM9 177 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 DPH5Q9H2P9 285 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 LRRC4CQ9HCJ2 640 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 NENFQ9UMX5 172 aa17.22■□□□□ 0.35
LDLR-204ENST00000545707 IGSF9BQ9UPX0 1349 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms