RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 PABPC5Q96DU9 382 aaKnown RBP15.78■□□□□ 0.12
SYNE1-235ENST00000537033 UIMC1Q96RL1 719 aa15.78■□□□□ 0.12
SYNE1-235ENST00000537033 PCDHA10Q9Y5I2 948 aa15.78■□□□□ 0.12
SYNE1-235ENST00000537033 WDR81Q562E7 1941 aa15.78■□□□□ 0.12
SYNE1-235ENST00000537033 EPB41L2O43491 1005 aaKnown RBP15.77■□□□□ 0.12
SYNE1-235ENST00000537033 RPS6KA5O75582 802 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 IFNAR1P17181 557 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 IBSPP21815 317 aaPredicted RBP15.77■□□□□ 0.12
SYNE1-235ENST00000537033 NTRK3Q16288 839 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 TMEM266Q2M3C6 531 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 METTL13Q8N6R0 699 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 RASGRP4Q8TDF6 673 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 FAM167AQ96KS9 214 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 SH3GLB2Q9NR46 395 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 CLDND1Q9NY35 253 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 VPS54Q9P1Q0 977 aa15.77■□□□□ 0.12
SYNE1-235ENST00000537033 DENND3A2RUS2 1198 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 WDR64B1ANS9 1081 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 H3BQ06 376 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 CPLX1O14810 134 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 GRM6O15303 877 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 PPFIA3O75145 1194 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 MMP1P03956 469 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 LINC00271P0C7V0 271 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 PDIA3P30101 505 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 SSTR3P32745 418 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 CIITAP33076 1130 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 NLRP5P59047 1200 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 CCT2P78371 535 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 PAN2Q504Q3 1202 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 RUFY3Q7L099 469 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 TRMT1LQ7Z2T5 733 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 KIAA0319LQ8IZA0 1049 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 NEK9Q8TD19 979 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 PPP2R3CQ969Q6 453 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 C22orf23Q9BZE7 217 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 NCOA5Q9HCD5 579 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 C1orf112Q9NSG2 853 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 GABBR1Q9UBS5 961 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 PCDHB7Q9Y5E2 793 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 MAFBQ9Y5Q3 323 aaPredicted RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 CYP46A1Q9Y6A2 500 aa15.76■□□□□ 0.11
SYNE1-235ENST00000537033 MRPL42Q9Y6G3 142 aaKnown RBP15.76■□□□□ 0.11
SYNE1-235ENST00000537033 ZBTB42B2RXF5 422 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 ADAMTS3O15072 1205 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 GPR182O15218 404 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 CSPG5O95196 566 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 C22orf31O95567 290 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 SARSP49591 514 aaKnown RBP15.75■□□□□ 0.11
SYNE1-235ENST00000537033 EVCP57679 992 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 SSRP1Q08945 709 aaKnown RBP15.75■□□□□ 0.11
SYNE1-235ENST00000537033 NAALADL2Q58DX5 795 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 CPLX2Q6PUV4 134 aaKnown RBP15.75■□□□□ 0.11
SYNE1-235ENST00000537033 RTN4RL1Q86UN2 441 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-235ENST00000537033 P2RX5Q93086 422 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 MAP7D2Q96T17 732 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 TMX1Q9H3N1 280 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 ERVK-5Q9HDB9 667 aa15.75■□□□□ 0.11
SYNE1-235ENST00000537033 NOC2LQ9Y3T9 749 aaKnown RBP15.75■□□□□ 0.11
SYNE1-235ENST00000537033 GRXCR2A6NFK2 248 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 MAGEB2O15479 319 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 GAS7O60861 476 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 IL9P15248 144 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 TMOD1P28289 359 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 SFNP31947 248 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 USP11P51784 963 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 CRYBB1P53674 252 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-235ENST00000537033 COL19A1Q14993 1142 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 KIZQ2M2Z5 673 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 FAM178BQ8IXR5 827 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 GJD3Q8N144 294 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 CRIPAKQ8N1N5 446 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 LENG9Q96B70 501 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 PPP1R16BQ96T49 567 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 RIT2Q99578 217 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 OSMRQ99650 979 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 ADAM2Q99965 735 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 EPHX3Q9H6B9 360 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 ZSWIM6Q9HCJ5 1215 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 ALG13Q9NP73 1137 aaKnown RBP15.74■□□□□ 0.11
SYNE1-235ENST00000537033 PLAGL2Q9UPG8 496 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 AKT3Q9Y243 479 aa15.74■□□□□ 0.11
SYNE1-235ENST00000537033 FNDC1Q4ZHG4 1894 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-235ENST00000537033 CHMP2AO43633 222 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 DEXIO95424 95 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 VTNP04004 478 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 NEFLP07196 543 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 ATP4AP20648 1035 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 JAK3P52333 1124 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 TMEM31Q5JXX7 168 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 SPOUT1Q5T280 376 aaKnown RBP15.73■□□□□ 0.11
SYNE1-235ENST00000537033 LRCH2Q5VUJ6 765 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 SLC24A5Q71RS6 500 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 ZNF710Q8N1W2 664 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 TMEM40Q8WWA1 233 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 TEKT3Q9BXF9 490 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 AAASQ9NRG9 546 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 DISC1Q9NRI5 854 aa15.73■□□□□ 0.11
SYNE1-235ENST00000537033 NRBP2Q9NSY0 501 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms