RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 GUCY2CP25092 1073 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 MTHFRP42898 656 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 MATR3P43243 847 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP53-207ENST00000510852 MPP1Q00013 466 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 GALEQ14376 348 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 NECTIN1Q15223 517 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 TM4SF20Q53R12 229 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 KIAA1524Q8TCG1 905 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 LRRN4Q8WUT4 740 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 DPF3Q92784 378 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 TATDN2Q93075 761 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 MS4A4AQ96JQ5 239 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 NUDT16L1Q9BRJ7 211 aaKnown RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 SENP2Q9HC62 589 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 KRT82Q9NSB4 513 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 NFKBIL1Q9UBC1 381 aaPredicted RBP10.67□□□□□ -0.7
USP53-207ENST00000510852 CCDC88AQ3V6T2 1871 aa10.67□□□□□ -0.7
USP53-207ENST00000510852 ABHD14A-ACY1A0A1B0GW23 586 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 GSG1L2A8MUP6 293 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 CASQ2O14958 399 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 ZBTB24O43167 697 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 CENPAP49450 140 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 NR1H3Q13133 447 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 SP140Q13342 867 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 SAFBQ15424 915 aaKnown RBP eCLIP10.66□□□□□ -0.7
USP53-207ENST00000510852 WSCD2Q2TBF2 565 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 SFMBT2Q5VUG0 894 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 CRTC1Q6UUV9 634 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 GALNT13Q8IUC8 556 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 RBM12BQ8IXT5 1001 aaKnown RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 SH3RF3Q8TEJ3 882 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 SDR42E1Q8WUS8 393 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 ZDHHC15Q96MV8 337 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 CRNKL1Q9BZJ0 848 aaKnown RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 CREBZFQ9NS37 354 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 PALD1Q9ULE6 856 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 MSRB2Q9Y3D2 182 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 NEMFO60524 1076 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 IGHA2P01877 340 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 CD9P21926 228 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 XPAP23025 273 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 POLR2BP30876 1174 aaKnown RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 NASPP49321 788 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 AP2B1P63010 937 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 LAPTM5Q13571 262 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 SEMA3AQ14563 771 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 CREB3L3Q68CJ9 461 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 APOBEC3HQ6NTF7 200 aaKnown RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 FAM47EQ6ZV65 393 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 KCNN1Q92952 543 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 PURBQ96QR8 312 aaKnown RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 C7orf25Q9BPX7 421 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 PCDHAC2Q9Y5I4 1007 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 V9GY48 417 aaPredicted RBP10.66□□□□□ -0.7
USP53-207ENST00000510852 PSME4Q14997 1843 aa10.66□□□□□ -0.7
USP53-207ENST00000510852 PMM2O15305 246 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 SMC2O95347 1197 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 GUCA1CO95843 209 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 PLCG2P16885 1265 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 RPS12P25398 132 aaKnown RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 GMPSP49915 693 aaPredicted RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 MLLT1Q03111 559 aaPredicted RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 ANKRD1Q15327 319 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 TCEA2Q15560 299 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 ALX1Q15699 326 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 CFAP100Q494V2 611 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 SETMARQ53H47 684 aaPredicted RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 HECTD3Q5T447 861 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 FASTKD5Q7L8L6 764 aaKnown RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 RNF180Q86T96 592 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 PEX5LQ8IYB4 626 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 NACAP1Q9BZK3 213 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 CAAP1Q9H8G2 361 aa10.65□□□□□ -0.7
USP53-207ENST00000510852 PPARGC1AQ9UBK2 798 aaKnown RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 RPAP1Q9BWH6 1393 aaPredicted RBP10.65□□□□□ -0.7
USP53-207ENST00000510852 ANO9A1A5B4 782 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 PLOD2O00469 737 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 ATP6V1B1P15313 513 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 MCM2P49736 904 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 INTS11Q5TA45 600 aaKnown RBP10.65□□□□□ -0.71
USP53-207ENST00000510852 SPATA1Q5VX52 437 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 WWC2Q6AWC2 1192 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 IQCA1Q86XH1 822 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 NRSN1Q8IZ57 195 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 TNIP2Q8NFZ5 429 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 RBM14Q96PK6 669 aaKnown RBP10.65□□□□□ -0.71
USP53-207ENST00000510852 TMEM165Q9HC07 324 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 DISC1Q9NRI5 854 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 GPR52Q9Y2T5 361 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 MYH2Q9UKX2 1941 aa10.65□□□□□ -0.71
USP53-207ENST00000510852 CCT5P48643 541 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 NCOA4Q13772 614 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 RNF20Q5VTR2 975 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 CDC42EP5Q6NZY7 148 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 TATDN1Q6P1N9 297 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 ZER1Q7Z7L7 766 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 TBC1D21Q8IYX1 336 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 PPP1R14CQ8TAE6 165 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 RASGRP4Q8TDF6 673 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 EPS8L3Q8TE67 593 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms