RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 DAGLBQ8NCG7 672 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 TSKSQ9UJT2 592 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 PCDHA13Q9Y5I0 950 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 CLDN3O15551 220 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 GGPS1O95749 300 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 RNF187Q5TA31 235 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 LMBRD2Q68DH5 695 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 ZNF653Q96CK0 615 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 CD44P16070 742 aaKnown RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 HPDP32754 393 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 THAP12O43422 761 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 MYBP10242 640 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 IFRD2Q12894 506 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 C15orf52Q6ZUT6 534 aaKnown RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 TAB3Q8N5C8 712 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 TMEM143Q96AN5 459 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CEP63Q96MT8 703 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CHP1Q99653 195 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 SELENOSQ9BQE4 189 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 MXRA8Q9BRK3 442 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 SERPING1P05155 500 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 ARP10275 920 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 TXNP10599 105 aaKnown RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 ATF7P17544 494 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CAPN2P17655 700 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 FXR1P51114 621 aaKnown RBP eCLIP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 INTS8Q75QN2 995 aaKnown RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CCDC94Q9BW85 323 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 POLR3FQ9H1D9 316 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 DPH5Q9H2P9 285 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 RABEP2Q9H5N1 569 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 GOLGA8SH3BPF8 625 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 VCAM1P19320 739 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 RPA1P27694 616 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 GFPT1Q06210 699 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 GRB10Q13322 594 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 FASTKD5Q7L8L6 764 aaKnown RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CCDC170Q8IYT3 715 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 C7orf31Q8N865 590 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 GIMAP8Q8ND71 665 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-207ENST00000504761 NEK9Q8TD19 979 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 CCDC77Q9BR77 488 aa15.3■□□□□ 0.04
TCOF1-207ENST00000504761 ATP2C2O75185 946 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 FXR2P51116 673 aaKnown RBP eCLIP15.29■□□□□ 0.043e-7■■■■□ 22.9
TCOF1-207ENST00000504761 BACE1P56817 501 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 GPR161Q8N6U8 529 aaKnown RBP15.29■□□□□ 0.04
TCOF1-207ENST00000504761 IPO4Q8TEX9 1081 aaKnown RBP15.29■□□□□ 0.04
TCOF1-207ENST00000504761 GMCL1Q96IK5 515 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 EFCAB8A8MWE9 144 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 MYO1FO00160 1098 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 MED24O75448 989 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 NAA30Q147X3 362 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-207ENST00000504761 MAPK6Q16659 721 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 AGPAT5Q9NUQ2 364 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 PPP1R3GB7ZBB8 358 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 TBX3O15119 743 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 STAT5BP51692 787 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 TTLL4Q14679 1199 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 PSPC1Q8WXF1 523 aaKnown RBP15.29■□□□□ 0.04
TCOF1-207ENST00000504761 RSPH10B2B2RC85 870 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 ICAM1P05362 532 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 RSPH10BP0C881 870 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 KAZNQ674X7 775 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 ANKRD36BP1Q96IX9 119 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 MTRQ99707 1265 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 GLIS2Q9BZE0 524 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-207ENST00000504761 TUFT1Q9NNX1 390 aa15.29■□□□□ 0.04
TCOF1-207ENST00000504761 SYNJ2BP-COX16A0A087WUM0 186 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 DAPK3O43293 454 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 KIF4AO95239 1232 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 YWHAEP62258 255 aaKnown RBP15.28■□□□□ 0.04
TCOF1-207ENST00000504761 COX16Q9P0S2 106 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 NUB1Q9Y5A7 615 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 AP5Z1O43299 807 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 SRGAP2O75044 1071 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 ZNF746Q6NUN9 644 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-207ENST00000504761 CATSPER4Q7RTX7 472 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 FAM83AQ86UY5 434 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 HACE1Q8IYU2 909 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 HESX1Q9UBX0 185 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 TOPAZ1Q8N9V7 1692 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 LMO7Q8WWI1 1683 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 A0A1B0GTH6 734 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 ALCAMQ13740 583 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 SRGAP1Q7Z6B7 1085 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 ANKRD13AQ8IZ07 590 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 FUCA2Q9BTY2 467 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 BCL9LQ86UU0 1499 aa15.28■□□□□ 0.04
TCOF1-207ENST00000504761 A0A087X0B3 334 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 ZNF384Q8TF68 577 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 SEL1LQ9UBV2 794 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 ADGRG1Q9Y653 693 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 UAP1Q16222 522 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-207ENST00000504761 NKX2-3Q8TAU0 364 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 KRT12Q99456 494 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 OGFRQ9NZT2 677 aa15.27■□□□□ 0.04
TCOF1-207ENST00000504761 KLK7P49862 253 aa15.27■□□□□ 0.03
TCOF1-207ENST00000504761 VAMP7P51809 220 aa15.27■□□□□ 0.03
TCOF1-207ENST00000504761 UHMK1Q8TAS1 419 aaKnown RBP15.27■□□□□ 0.03
TCOF1-207ENST00000504761 NUDT12Q9BQG2 462 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms