RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 ZNF618Q5T7W0 954 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 KRT79Q5XKE5 535 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 TPH2Q8IWU9 490 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 DYDC2Q96IM9 177 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 RNPC3Q96LT9 517 aaKnown RBP16.38■□□□□ 0.21
LIMS3-205ENST00000487150 HSD17B14Q9BPX1 270 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 POLR3CQ9BUI4 534 aaPredicted RBP16.38■□□□□ 0.21
LIMS3-205ENST00000487150 LRWD1Q9UFC0 647 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 SQORQ9Y6N5 450 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 KDM3AQ9Y4C1 1321 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 LTBP2Q14767 1821 aa16.38■□□□□ 0.21
LIMS3-205ENST00000487150 CEP290O15078 2479 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 ZBTB42B2RXF5 422 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 FGBP02675 491 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 CXCL10P02778 98 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 RPA1P27694 616 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 MRPS6P82932 125 aaKnown RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 TARBP2Q15633 366 aaKnown RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 ATL3Q6DD88 541 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 RUFY4Q6ZNE9 571 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 TRMT1LQ7Z2T5 733 aaKnown RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 METTL13Q8N6R0 699 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 C4orf32Q8N8J7 132 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 IGSF22Q8N9C0 903 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 DNAJB3Q8WWF6 145 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 APBB2Q92870 758 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 SCLYQ96I15 445 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 CEP170P1Q96L14 293 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 ZNF396Q96N95 335 aaPredicted RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 FTOQ9C0B1 505 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 FAM49AQ9H0Q0 323 aaPredicted RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 CYP26B1Q9NR63 512 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 ANKEF1Q9NU02 776 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 RGL1Q9NZL6 768 aa16.37■□□□□ 0.21
LIMS3-205ENST00000487150 MORC2Q9Y6X9 1032 aaPredicted RBP16.37■□□□□ 0.21
LIMS3-205ENST00000487150 DOCK5Q9H7D0 1870 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 SLITRK3O94933 977 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 CTSHP09668 335 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 ZSCAN22P10073 491 aaPredicted RBP16.36■□□□□ 0.21
LIMS3-205ENST00000487150 POLGP54098 1239 aaPredicted RBP16.36■□□□□ 0.21
LIMS3-205ENST00000487150 MTERF2Q49AM1 385 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 TRAPPC12Q8WVT3 735 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 HERVK_113Q902F9 699 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 SEPT8Q92599 483 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 WNT8BQ93098 351 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 NACC1Q96RE7 527 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 ATP6V1DQ9Y5K8 247 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 TRPV2Q9Y5S1 764 aa16.36■□□□□ 0.21
LIMS3-205ENST00000487150 LONP1P36776 959 aaKnown RBP16.35■□□□□ 0.21
LIMS3-205ENST00000487150 CCT6AP40227 531 aaKnown RBP16.35■□□□□ 0.21
LIMS3-205ENST00000487150 CTTNQ14247 550 aaKnown RBP16.35■□□□□ 0.21
LIMS3-205ENST00000487150 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
LIMS3-205ENST00000487150 LRIT3Q3SXY7 679 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 TMEM240Q5SV17 173 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 EFCAB12Q6NXP0 572 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 ANO5Q75V66 913 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 DEFB128Q7Z7B8 93 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 SNX29Q8TEQ0 813 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 TCP11Q8WWU5 503 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 NT5C3AQ9H0P0 336 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 DAXXQ9UER7 740 aaPredicted RBP16.35■□□□□ 0.21
LIMS3-205ENST00000487150 AKT3Q9Y243 479 aa16.35■□□□□ 0.21
LIMS3-205ENST00000487150 ABHD14A-ACY1A0A1B0GW23 586 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 MAFO75444 373 aaPredicted RBP16.34■□□□□ 0.21
LIMS3-205ENST00000487150 DGAT1O75907 488 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 ANP32AP39687 249 aaKnown RBP16.34■□□□□ 0.21
LIMS3-205ENST00000487150 XKR9Q5GH70 373 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 TRAF7Q6Q0C0 670 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 TSHZ1Q6ZSZ6 1077 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 ZNF365Q70YC5 407 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 CATSPER3Q86XQ3 398 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 KIAA0319LQ8IZA0 1049 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 CDK5RAP3Q96JB5 506 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 SCLT1Q96NL6 688 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIMS3-205ENST00000487150 DBR1Q9UK59 544 aaKnown RBP16.34■□□□□ 0.21
LIMS3-205ENST00000487150 CDY2AQ9Y6F7 541 aa16.34■□□□□ 0.21
LIMS3-205ENST00000487150 VWA3AA6NCI4 1184 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 STBD1O95210 358 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 F13A1P00488 732 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 TXLNAP40222 546 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 KCNJ6P48051 423 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 MGAT3Q09327 533 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 IKBKEQ14164 716 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 SHHQ15465 462 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 HABP4Q5JVS0 413 aaKnown RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 MCPH1Q8NEM0 835 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 PSPC1Q8WXF1 523 aaKnown RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 IFIH1Q9BYX4 1025 aaKnown RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 CELF4Q9BZC1 486 aaKnown RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 DHX33Q9H6R0 707 aaKnown RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 SUGCTQ9HAC7 445 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 ATP6V0A4Q9HBG4 840 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 WRAP73Q9P2S5 460 aaPredicted RBP16.33■□□□□ 0.2
LIMS3-205ENST00000487150 TANC1Q9C0D5 1861 aa16.33■□□□□ 0.2
LIMS3-205ENST00000487150 IGKV6-21A0A0C4DH24 114 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 ARHGEF35A5YM69 484 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 ZBBXA8MT70 800 aa16.32■□□□□ 0.2
LIMS3-205ENST00000487150 NBNO60934 754 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms