RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KLRC4O43908 158 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 TBCAO75347 108 aaKnown RBP11.29□□□□□ -0.6
USP39-215ENST00000481409 STBD1O95210 358 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 KRT18P05783 430 aaKnown RBP11.29□□□□□ -0.6
USP39-215ENST00000481409 MMP3P08254 477 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 RARBP10826 455 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 CAPN2P17655 700 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 ZNF131P52739 623 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 GJA9P57773 515 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 RTP1P59025 263 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 PSMC6P62333 389 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 STIM1Q13586 685 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 FOXR2Q6PJQ5 311 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 PADI6Q6TGC4 694 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 STXBP4Q6ZWJ1 553 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 ATP8B4Q8TF62 1192 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 LRRC15Q8TF66 581 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 KIFAP3Q92845 792 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 GLG1Q92896 1179 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 DNAJC19Q96DA6 116 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 CEP170P1Q96L14 293 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 DRC1Q96MC2 740 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 UPF3AQ9H1J1 476 aaKnown RBP11.29□□□□□ -0.6
USP39-215ENST00000481409 CYP26B1Q9NR63 512 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 WRAP73Q9P2S5 460 aaPredicted RBP11.29□□□□□ -0.6
USP39-215ENST00000481409 MAN1B1Q9UKM7 699 aa11.29□□□□□ -0.6
USP39-215ENST00000481409 ZSWIM8A7E2V4 1837 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 H0YCG3 227 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 FOXN1O15353 648 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 DYNC1LI2O43237 492 aaPredicted RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 ZNF862O60290 1169 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 LGALS2P05162 132 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 SSBP05455 408 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP39-215ENST00000481409 PRR29P0C7W0 189 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 CST5P28325 142 aaPredicted RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 ERCC5P28715 1186 aaPredicted RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 GRK4P32298 578 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 SP4Q02446 784 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 CACNB2Q08289 660 aaPredicted RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 EHHADHQ08426 723 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 ALCAMQ13740 583 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 GIT2Q14161 759 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 GSE1Q14687 1217 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 TARBP2Q15633 366 aaKnown RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 PKN2Q16513 984 aaKnown RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 UGCGQ16739 394 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 KMT5BQ4FZB7 885 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 ARSHQ5FYA8 562 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 XKR9Q5GH70 373 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 ZNF484Q5JVG2 852 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 ANO5Q75V66 913 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 GRAMD1CQ8IYS0 662 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 ZNF710Q8N1W2 664 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 PIGOQ8TEQ8 1089 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 AFG1LQ8WV93 481 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 SLC7A3Q8WY07 619 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 COPS5Q92905 334 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 KCNN1Q92952 543 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 PCYT2Q99447 389 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 BCAS3Q9H6U6 928 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 OLFML3Q9NRN5 406 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 PANK4Q9NVE7 773 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 LARSQ9P2J5 1176 aaKnown RBP11.28□□□□□ -0.6
USP39-215ENST00000481409 PHLPP2Q6ZVD8 1323 aa11.28□□□□□ -0.6
USP39-215ENST00000481409 RRN3P2A6NIE6 340 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 SMTNL1A8MU46 457 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 H3BRB1 525 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 MAGEB2O15479 319 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 CABYRO75952 493 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 ATP4AP20648 1035 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 DHX8Q14562 1220 aaKnown RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 UVSSAQ2YD98 709 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 PRAMEF19Q5SWL8 479 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 PCSK9Q8NBP7 692 aaKnown RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 FAM200AQ8TCP9 573 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 TCP11Q8WWU5 503 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 REEP2Q9BRK0 252 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 C16orf70Q9BSU1 422 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 SEZ6LQ9BYH1 1024 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 BLZF1Q9H2G9 400 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 TUT1Q9H6E5 874 aaKnown RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 DHX33Q9H6R0 707 aaKnown RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 ATP6V0A4Q9HBG4 840 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 PARVGQ9HBI0 331 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 HMX1Q9NP08 348 aaPredicted RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 PDLIM7Q9NR12 457 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 SEPT9Q9UHD8 586 aaPredicted RBP11.27□□□□□ -0.61
USP39-215ENST00000481409 PTPN22Q9Y2R2 807 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 TRIM17Q9Y577 477 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 ARID2Q68CP9 1835 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 UBE4BO95155 1302 aa11.27□□□□□ -0.61
USP39-215ENST00000481409 BICDL2A1A5D9 508 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 PSMA7O14818 248 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 IKBKBO14920 756 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 FAM13AO94988 1023 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 F2P00734 622 aa11.26□□□□□ -0.61
USP39-215ENST00000481409 RPLP2P05387 115 aaKnown RBP11.26□□□□□ -0.61
USP39-215ENST00000481409 IDEP14735 1019 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms