RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 IFNAR1P17181 557 aa17.28■□□□□ 0.36
LIMS3-203ENST00000480744 PDIA3P30101 505 aaKnown RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 NTRK3Q16288 839 aa17.28■□□□□ 0.36
LIMS3-203ENST00000480744 PTCRAQ6ISU1 281 aaPredicted RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 ZNF746Q6NUN9 644 aaPredicted RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 FBXL16Q8N461 479 aa17.28■□□□□ 0.36
LIMS3-203ENST00000480744 ZNF689Q96CS4 500 aaPredicted RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 LRFN2Q9ULH4 789 aa17.28■□□□□ 0.36
LIMS3-203ENST00000480744 MRPL42Q9Y6G3 142 aaKnown RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 FNDC1Q4ZHG4 1894 aaPredicted RBP17.28■□□□□ 0.36
LIMS3-203ENST00000480744 RPS6KA5O75582 802 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 LINC00271P0C7V0 271 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 ATP4AP20648 1035 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 NLRP5P59047 1200 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 RUFY3Q7L099 469 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 SMAP1Q8IYB5 467 aaPredicted RBP17.27■□□□□ 0.36
LIMS3-203ENST00000480744 TRIM22Q8IYM9 498 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 KIAA0319LQ8IZA0 1049 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 METTL13Q8N6R0 699 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.27■□□□□ 0.36
LIMS3-203ENST00000480744 CLP1Q92989 425 aaKnown RBP17.27■□□□□ 0.36
LIMS3-203ENST00000480744 C1QTNF1Q9BXJ1 281 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 TMX1Q9H3N1 280 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 CDHR5Q9HBB8 845 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 CLDND1Q9NY35 253 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 GABBR1Q9UBS5 961 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 RAPGEFL1Q9UHV5 662 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 NOC2LQ9Y3T9 749 aaKnown RBP17.27■□□□□ 0.36
LIMS3-203ENST00000480744 PCDHA10Q9Y5I2 948 aa17.27■□□□□ 0.36
LIMS3-203ENST00000480744 PLXNA4Q9HCM2 1894 aa17.27■□□□□ 0.35
LIMS3-203ENST00000480744 ZBTB42B2RXF5 422 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 IL9P15248 144 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 CIITAP33076 1130 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 GATMP50440 423 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 TOB2Q14106 344 aaPredicted RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 CMTR2Q8IYT2 770 aaKnown RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 BBXQ8WY36 941 aaPredicted RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 PABPC5Q96DU9 382 aaKnown RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 LARP6Q9BRS8 491 aaKnown RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 LMAN2LQ9H0V9 348 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 EPHX3Q9H6B9 360 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 ERVK-5Q9HDB9 667 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 ALG13Q9NP73 1137 aaKnown RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 MAFBQ9Y5Q3 323 aaPredicted RBP17.26■□□□□ 0.35
LIMS3-203ENST00000480744 CYP46A1Q9Y6A2 500 aa17.26■□□□□ 0.35
LIMS3-203ENST00000480744 DENND3A2RUS2 1198 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 CPLX1O14810 134 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 CHMP2AO43633 222 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 C22orf31O95567 290 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 VTNP04004 478 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 SSTR3P32745 418 aaPredicted RBP17.25■□□□□ 0.35
LIMS3-203ENST00000480744 SSRP1Q08945 709 aaKnown RBP17.25■□□□□ 0.35
LIMS3-203ENST00000480744 KIZQ2M2Z5 673 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 ODR4Q5SWX8 454 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 NEK9Q8TD19 979 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 TMEM40Q8WWA1 233 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 LENG9Q96B70 501 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 OSMRQ99650 979 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 PLVAPQ9BX97 442 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 ZSWIM6Q9HCJ5 1215 aa17.25■□□□□ 0.35
LIMS3-203ENST00000480744 WDR64B1ANS9 1081 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 MSH4O15457 936 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 MGEA5O60502 916 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 SARSP49591 514 aaKnown RBP17.24■□□□□ 0.35
LIMS3-203ENST00000480744 EVCP57679 992 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 STK3Q13188 491 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 PUS10Q3MIT2 529 aaKnown RBP17.24■□□□□ 0.35
LIMS3-203ENST00000480744 FAM178BQ8IXR5 827 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 CRIPAKQ8N1N5 446 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 FAM167AQ96KS9 214 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 ADAM2Q99965 735 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 UPF3BQ9BZI7 483 aaKnown RBP17.24■□□□□ 0.35
LIMS3-203ENST00000480744 IGFLR1Q9H665 355 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 CD320Q9NPF0 282 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 SH3GLB2Q9NR46 395 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 ST3GAL5Q9UNP4 418 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 PLAGL2Q9UPG8 496 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 CEP131Q9UPN4 1083 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 PCDHB7Q9Y5E2 793 aa17.24■□□□□ 0.35
LIMS3-203ENST00000480744 GRXCR2A6NFK2 248 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 GPR182O15218 404 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 GAS7O60861 476 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 MMP1P03956 469 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 CLCN3P51790 818 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 HYAL1Q12794 435 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 CLUL1Q15846 466 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 SPOUT1Q5T280 376 aaKnown RBP17.23■□□□□ 0.35
LIMS3-203ENST00000480744 GJD3Q8N144 294 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 TBCKQ8TEA7 893 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 KHSRPQ92945 711 aaKnown RBP eCLIP17.23■□□□□ 0.35
LIMS3-203ENST00000480744 GJA10Q969M2 543 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 TEKT3Q9BXF9 490 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 DISC1Q9NRI5 854 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 AKT3Q9Y243 479 aa17.23■□□□□ 0.35
LIMS3-203ENST00000480744 TBKBP1A7MCY6 615 aa17.22■□□□□ 0.35
LIMS3-203ENST00000480744 MAGEB2O15479 319 aa17.22■□□□□ 0.35
LIMS3-203ENST00000480744 NCK2O43639 380 aa17.22■□□□□ 0.35
LIMS3-203ENST00000480744 OATP04181 439 aa17.22■□□□□ 0.35
LIMS3-203ENST00000480744 ITGB1P05556 798 aa17.22■□□□□ 0.35
LIMS3-203ENST00000480744 USP11P51784 963 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms