RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 BANK1Q8NDB2 785 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 CCDC43Q96MW1 224 aaKnown RBP9.22□□□□□ -0.93
USP54-212ENST00000480210 UIMC1Q96RL1 719 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 TIPINQ9BVW5 301 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 LRRC27Q9C0I9 530 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 KCND2Q9NZV8 630 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PRKAG2Q9UGJ0 569 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 PCDHA2Q9Y5H9 948 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 GRIN2DO15399 1336 aa9.22□□□□□ -0.93
USP54-212ENST00000480210 SMIM35A0A1B0GVV1 85 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 A0A1W2PQ27 194 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 A0A1W2PQ64 194 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 A0A1W2PQD8 194 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 GOLGA6L4A6NEF3 574 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 ASAP2O43150 1006 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 ZNF862O60290 1169 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 EVI5O60447 810 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 MED24O75448 989 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 DGAT1O75907 488 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 STBD1O95210 358 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 EYA4O95677 639 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CLTBP09497 229 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CMA1P23946 247 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 MARK3P27448 753 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 ME1P48163 572 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 ATN1P54259 1190 aaPredicted RBP9.21□□□□□ -0.94
USP54-212ENST00000480210 RBL2Q08999 1139 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 TBC1D8BQ0IIM8 1120 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 TARBP2Q15633 366 aaKnown RBP9.21□□□□□ -0.94
USP54-212ENST00000480210 MTHFD1LQ6UB35 978 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CLEC17AQ6ZS10 378 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 TRIM50Q86XT4 487 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 LEO1Q8WVC0 666 aaPredicted RBP9.21□□□□□ -0.94
USP54-212ENST00000480210 TCP11Q8WWU5 503 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 DPF3Q92784 378 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CCDC34Q96HJ3 373 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CEP170P1Q96L14 293 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CSRNP2Q9H175 543 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CUEDC2Q9H467 287 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 CYP26B1Q9NR63 512 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 RGL1Q9NZL6 768 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 STK17AQ9UEE5 414 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 SEPT9Q9UHD8 586 aaPredicted RBP9.21□□□□□ -0.94
USP54-212ENST00000480210 USP25Q9UHP3 1055 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 TUBE1Q9UJT0 475 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 PCDHA7Q9UN72 937 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 KIAA1024Q9UPX6 916 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 ATP11BQ9Y2G3 1177 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 TELO2Q9Y4R8 837 aa9.21□□□□□ -0.94
USP54-212ENST00000480210 M0QZ92 97 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 PITPNM1O00562 1244 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 KIAA0355O15063 1070 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 MAFO75444 373 aaPredicted RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 KLRC1P26715 233 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 RARRES1P49788 294 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 CHMP4BP1P59074 171 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 CYP4A11Q02928 519 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 TLE2Q04725 743 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 UGCGQ16739 394 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 LRRC26Q2I0M4 334 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 TRIM60Q495X7 471 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 XKR9Q5GH70 373 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 ODR4Q5SWX8 454 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 AXDND1Q5T1B0 1012 aaPredicted RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 IER5Q5VY09 327 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 RRAGBQ5VZM2 374 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 GDF6Q6KF10 455 aaPredicted RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 ANO5Q75V66 913 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 SERINC5Q86VE9 423 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 MCPH1Q8NEM0 835 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 RASSF8Q8NHQ8 419 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 LMBR1Q8WVP7 490 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 SLC7A3Q8WY07 619 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 GBP4Q96PP9 640 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 MMTAG2Q9BU76 263 aaKnown RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 FTOQ9C0B1 505 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP54-212ENST00000480210 DHX33Q9H6R0 707 aaKnown RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 MAGEF1Q9HAY2 307 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 DDX19AQ9NUU7 478 aaKnown RBP9.2□□□□□ -0.94
USP54-212ENST00000480210 TMEM39AQ9NV64 488 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 SETD4Q9NVD3 440 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 SQORQ9Y6N5 450 aa9.2□□□□□ -0.94
USP54-212ENST00000480210 IGKV6-21A0A0C4DH24 114 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 FAM237AA0A1B0GTK4 181 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 ARHGEF35A5YM69 484 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 GOLGA6L22H0YM25 854 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 TREHO43280 583 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 B4GALT4O60513 344 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 PQBP1O60828 265 aaKnown RBP9.19□□□□□ -0.94
USP54-212ENST00000480210 CYP2C9P11712 490 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 KCNA4P22459 653 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 RFC2P35250 354 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 POLGP54098 1239 aaPredicted RBP9.19□□□□□ -0.94
USP54-212ENST00000480210 AMPD3Q01432 767 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 POU5F1BQ06416 359 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 FAAP100Q0VG06 881 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 FOXD4L6Q3SYB3 417 aaPredicted RBP9.19□□□□□ -0.94
USP54-212ENST00000480210 MTERF2Q49AM1 385 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 TMEM119Q4V9L6 283 aa9.19□□□□□ -0.94
USP54-212ENST00000480210 MARCH8Q5T0T0 291 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms