RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 BCAR3O75815 825 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 GGPS1O95749 300 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 GNAI3P08754 354 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 IBSPP21815 317 aaPredicted RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 TARSP26639 723 aaKnown RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 ARHGAP4P98171 946 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 HTR4Q13639 388 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 PTPN14Q15678 1187 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 COL28A1Q2UY09 1125 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 LETM2Q2VYF4 491 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 MARCH8Q5T0T0 291 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 IL31Q6EBC2 164 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 TMC7Q7Z402 723 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 TMEM173Q86WV6 379 aaPredicted RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 IL31RAQ8NI17 732 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 SSH3Q8TE77 659 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 DNAJB3Q8WWF6 145 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 CLDN23Q96B33 292 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 ZFP91Q96JP5 570 aaPredicted RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 SCNM1Q9BWG6 230 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 LSM14BQ9BX40 385 aaKnown RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 SMC4Q9NTJ3 1288 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 DZANK1Q9NVP4 752 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 EPS15L1Q9UBC2 864 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 ARPP21Q9UBL0 812 aaPredicted RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 PADI3Q9ULW8 664 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 MTMR7Q9Y216 660 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 NOP58Q9Y2X3 529 aaKnown RBP5.67□□□□□ -1.5
USP4-209ENST00000475873 MRVI1Q9Y6F6 885 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 TEX15Q9BXT5 2789 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 NRCAMQ92823 1304 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 PCNX2A6NKB5 2137 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 ASCC3Q8N3C0 2202 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 SPTAN1Q13813 2472 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 FAM170BA6NMN3 283 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 MINDY4BA8MYZ0 360 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 ANHXE9PGG2 379 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 OPLAHO14841 1288 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SURF6O75683 361 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 STAG3L1P0CL83 205 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 EIF2AK2P19525 551 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 NOVP48745 357 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SARSP49591 514 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 RARSP54136 660 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 GPC5P78333 572 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 MTAPQ13126 283 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SNW1Q13573 536 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 SMC1AQ14683 1233 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 STXBP2Q15833 593 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 TMEM266Q2M3C6 531 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SPOUT1Q5T280 376 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 STPG1Q5TH74 334 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 KCNT2Q6UVM3 1135 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 ZNF687Q8N1G0 1237 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SLC39A11Q8N1S5 342 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 BCL7CQ8WUZ0 217 aaPredicted RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 BBXQ8WY36 941 aaPredicted RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 STRBPQ96SI9 672 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 DNAJC2Q99543 621 aaKnown RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 GPR20Q99678 358 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 MYL10Q9BUA6 226 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 BCO2Q9BYV7 579 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 SMOC1Q9H4F8 434 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 LTB4R2Q9NPC1 389 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 HDAC5Q9UQL6 1122 aa5.66□□□□□ -1.5
USP4-209ENST00000475873 FRMPD2Q68DX3 1309 aaPredicted RBP5.66□□□□□ -1.5
USP4-209ENST00000475873 MBLAC1A4D2B0 266 aaPredicted RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 C9IYK1 514 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 EIF3JO75822 258 aaKnown RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 GNAI2P04899 355 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 NR3C2P08235 984 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 PLA2G2AP14555 144 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 LAG3P18627 525 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 GBP2P32456 591 aaPredicted RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 MRPS6P82932 125 aaKnown RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 TFAP4Q01664 338 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 ZNF252P-AS1Q0IIN9 211 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 TMEM62Q0P6H9 643 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 SEMA3FQ13275 785 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 OS9Q13438 667 aaPredicted RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 UBXN2BQ14CS0 331 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 TTF1Q15361 905 aaPredicted RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 CCDC96Q2M329 555 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 ALDH1L2Q3SY69 923 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 USH1GQ495M9 461 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 AACSQ86V21 672 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 CABP7Q86V35 215 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 PROSER1Q86XN7 944 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 AMOTL1Q8IY63 956 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 CELF5Q8N6W0 485 aaKnown RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 RGS22Q8NE09 1264 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 NSUN6Q8TEA1 469 aaKnown RBP5.65□□□□□ -1.5
USP4-209ENST00000475873 KIF12Q96FN5 646 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 CASD1Q96PB1 797 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 RMDN3Q96TC7 470 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 VN1R3Q9BXE9 311 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 ZBP1Q9H171 429 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 CPVLQ9H3G5 476 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 SFXN1Q9H9B4 322 aa5.65□□□□□ -1.5
USP4-209ENST00000475873 GPCPD1Q9NPB8 672 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms