RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TMEM40Q8WWA1 233 aa27.78■■■□□ 2.04
PTCH1-210ENST00000468211 NSUN3Q9H649 340 aaKnown RBP27.78■■■□□ 2.04
PTCH1-210ENST00000468211 TBC1D22BQ9NU19 505 aa27.78■■■□□ 2.04
PTCH1-210ENST00000468211 GINS2Q9Y248 185 aa27.78■■■□□ 2.04
PTCH1-210ENST00000468211 NOC2LQ9Y3T9 749 aaKnown RBP27.78■■■□□ 2.04
PTCH1-210ENST00000468211 MAFBQ9Y5Q3 323 aaPredicted RBP27.78■■■□□ 2.04
PTCH1-210ENST00000468211 MRPL42Q9Y6G3 142 aaKnown RBP27.78■■■□□ 2.04
PTCH1-210ENST00000468211 FNDC1Q4ZHG4 1894 aaPredicted RBP27.78■■■□□ 2.04
PTCH1-210ENST00000468211 H3BQ06 376 aaPredicted RBP27.77■■■□□ 2.04
PTCH1-210ENST00000468211 IL9P15248 144 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 GATMP50440 423 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 ZNF484Q5JVG2 852 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 ZNF746Q6NUN9 644 aaPredicted RBP27.77■■■□□ 2.04
PTCH1-210ENST00000468211 RUFY3Q7L099 469 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 NPAS4Q8IUM7 802 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 NEK9Q8TD19 979 aa27.77■■■□□ 2.04
PTCH1-210ENST00000468211 LARP6Q9BRS8 491 aaKnown RBP27.77■■■□□ 2.04
PTCH1-210ENST00000468211 MGEA5O60502 916 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 C22orf31O95567 290 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 COL19A1Q14993 1142 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 PPP1R16BQ96T49 567 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 C11orf84Q9BUA3 381 aaPredicted RBP27.76■■■□□ 2.03
PTCH1-210ENST00000468211 ZSWIM6Q9HCJ5 1215 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 ERVK-5Q9HDB9 667 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 RWDD3Q9Y3V2 267 aa27.76■■■□□ 2.03
PTCH1-210ENST00000468211 PLXNA4Q9HCM2 1894 aa27.75■■■□□ 2.03
PTCH1-210ENST00000468211 NFX1Q12986 1120 aaKnown RBP27.75■■■□□ 2.03
PTCH1-210ENST00000468211 PAN2Q504Q3 1202 aaKnown RBP27.75■■■□□ 2.03
PTCH1-210ENST00000468211 PTCRAQ6ISU1 281 aaPredicted RBP27.75■■■□□ 2.03
PTCH1-210ENST00000468211 CKAP2LQ8IYA6 745 aa27.75■■■□□ 2.03
PTCH1-210ENST00000468211 CCDC148Q8NFR7 591 aa27.75■■■□□ 2.03
PTCH1-210ENST00000468211 PABPC5Q96DU9 382 aaKnown RBP27.75■■■□□ 2.03
PTCH1-210ENST00000468211 ALG13Q9NP73 1137 aaKnown RBP27.75■■■□□ 2.03
PTCH1-210ENST00000468211 GABBR1Q9UBS5 961 aa27.75■■■□□ 2.03
PTCH1-210ENST00000468211 CSPG5O95196 566 aa27.74■■■□□ 2.03
PTCH1-210ENST00000468211 CAMK1Q14012 370 aa27.74■■■□□ 2.03
PTCH1-210ENST00000468211 FAM178BQ8IXR5 827 aa27.74■■■□□ 2.03
PTCH1-210ENST00000468211 SMAP1Q8IYB5 467 aaPredicted RBP27.74■■■□□ 2.03
PTCH1-210ENST00000468211 CMTR2Q8IYT2 770 aaKnown RBP27.74■■■□□ 2.03
PTCH1-210ENST00000468211 BICD2Q8TD16 824 aa27.74■■■□□ 2.03
PTCH1-210ENST00000468211 BBXQ8WY36 941 aaPredicted RBP27.74■■■□□ 2.03
PTCH1-210ENST00000468211 PCDHA10Q9Y5I2 948 aa27.74■■■□□ 2.03
PTCH1-210ENST00000468211 MSH4O15457 936 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 PSAPP07602 524 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 IBSPP21815 317 aaPredicted RBP27.73■■■□□ 2.03
PTCH1-210ENST00000468211 KIZQ2M2Z5 673 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 EP400NLQ6ZTU2 488 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 GJA10Q969M2 543 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 LMAN2LQ9H0V9 348 aa27.73■■■□□ 2.03
PTCH1-210ENST00000468211 GRXCR2A6NFK2 248 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 ZNF862O60290 1169 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 RPS6KA5O75582 802 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 VTNP04004 478 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 DNAJB1P25685 340 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 LTBRP36941 435 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 C1QTNF1Q9BXJ1 281 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 SH3GLB2Q9NR46 395 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 PLAGL2Q9UPG8 496 aa27.72■■■□□ 2.03
PTCH1-210ENST00000468211 STAG3L1P0CL83 205 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 GTF2F1P35269 517 aaKnown RBP eCLIP27.71■■■□□ 2.03
PTCH1-210ENST00000468211 NLRP5P59047 1200 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 HYAL1Q12794 435 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 METTL13Q8N6R0 699 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 OSMRQ99650 979 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 PLVAPQ9BX97 442 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 UPF3BQ9BZI7 483 aaKnown RBP27.71■■■□□ 2.03
PTCH1-210ENST00000468211 CLDND1Q9NY35 253 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 ST3GAL5Q9UNP4 418 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 SAMM50Q9Y512 469 aa27.71■■■□□ 2.03
PTCH1-210ENST00000468211 C5orf42Q9H799 3197 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 GPR32O75388 356 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 MMP1P03956 469 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 ITGB1P05556 798 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 SARSP49591 514 aaKnown RBP27.7■■■□□ 2.02
PTCH1-210ENST00000468211 UGCGQ16739 394 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 FAM228AQ86W67 206 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 ADAM2Q99965 735 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 CYP46A1Q9Y6A2 500 aa27.7■■■□□ 2.02
PTCH1-210ENST00000468211 WDR64B1ANS9 1081 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 EPB41L2O43491 1005 aaKnown RBP27.69■■■□□ 2.02
PTCH1-210ENST00000468211 USP11P51784 963 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 CLCN3P51790 818 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 CRYBB1P53674 252 aaPredicted RBP27.69■■■□□ 2.02
PTCH1-210ENST00000468211 DLX2Q07687 328 aaPredicted RBP27.69■■■□□ 2.02
PTCH1-210ENST00000468211 SSRP1Q08945 709 aaKnown RBP27.69■■■□□ 2.02
PTCH1-210ENST00000468211 CTC1Q2NKJ3 1217 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 LINC01465Q8N7H1 131 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 SPPL3Q8TCT6 385 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 TBCKQ8TEA7 893 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 SLC5A5Q92911 643 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 P2RX5Q93086 422 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 AIFM3Q96NN9 605 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 DISC1Q9NRI5 854 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 RGS18Q9NS28 235 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 TCEAL9Q9UHQ7 104 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 LRFN2Q9ULH4 789 aa27.69■■■□□ 2.02
PTCH1-210ENST00000468211 C9IYK1 514 aa27.68■■■□□ 2.02
PTCH1-210ENST00000468211 CHMP2AO43633 222 aa27.68■■■□□ 2.02
PTCH1-210ENST00000468211 STK3Q13188 491 aa27.68■■■□□ 2.02
PTCH1-210ENST00000468211 NPY5RQ15761 445 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms