RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 NTRK3Q16288 839 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 PRR16Q569H4 304 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 ZNF746Q6NUN9 644 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-206ENST00000466532 CMTR2Q8IYT2 770 aaKnown RBP21.73■■□□□ 1.07
COL9A3-206ENST00000466532 CRIPAKQ8N1N5 446 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 CCDC148Q8NFR7 591 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 BICD2Q8TD16 824 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 NEK9Q8TD19 979 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 TMX1Q9H3N1 280 aa21.73■■□□□ 1.07
COL9A3-206ENST00000466532 MRPL42Q9Y6G3 142 aaKnown RBP21.73■■□□□ 1.07
COL9A3-206ENST00000466532 ZBTB42B2RXF5 422 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 CCT2P78371 535 aaKnown RBP21.72■■□□□ 1.07
COL9A3-206ENST00000466532 PUS10Q3MIT2 529 aaKnown RBP21.72■■□□□ 1.07
COL9A3-206ENST00000466532 FAM178BQ8IXR5 827 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 SMAP1Q8IYB5 467 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-206ENST00000466532 KIAA0319LQ8IZA0 1049 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 PLVAPQ9BX97 442 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 CD320Q9NPF0 282 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 CLDND1Q9NY35 253 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 VPS54Q9P1Q0 977 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 LRFN2Q9ULH4 789 aa21.72■■□□□ 1.07
COL9A3-206ENST00000466532 NOC2LQ9Y3T9 749 aaKnown RBP21.72■■□□□ 1.07
COL9A3-206ENST00000466532 MAFBQ9Y5Q3 323 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-206ENST00000466532 GRXCR2A6NFK2 248 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 RPS6KA5O75582 802 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 CSPG5O95196 566 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 PSAPP07602 524 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 IFNAR1P17181 557 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 IBSPP21815 317 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 PDIA3P30101 505 aaKnown RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 CIITAP33076 1130 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 COL19A1Q14993 1142 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 PAN2Q504Q3 1202 aaKnown RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 TRMT1LQ7Z2T5 733 aaKnown RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 BBXQ8WY36 941 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 KHSRPQ92945 711 aaKnown RBP eCLIP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 CDHR5Q9HBB8 845 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 NCOA5Q9HCD5 579 aaKnown RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 ERVK-5Q9HDB9 667 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 ALG13Q9NP73 1137 aaKnown RBP21.71■■□□□ 1.07
COL9A3-206ENST00000466532 PCDHA10Q9Y5I2 948 aa21.71■■□□□ 1.07
COL9A3-206ENST00000466532 C22orf31O95567 290 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 MMP1P03956 469 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 TMEM40Q8WWA1 233 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 P2RX5Q93086 422 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 PPP1R16BQ96T49 567 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 GABBR1Q9UBS5 961 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 SAMM50Q9Y512 469 aa21.7■■□□□ 1.06
COL9A3-206ENST00000466532 NCK2O43639 380 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 MGEA5O60502 916 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 SSTR3P32745 418 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-206ENST00000466532 SARSP49591 514 aaKnown RBP21.69■■□□□ 1.06
COL9A3-206ENST00000466532 GATMP50440 423 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 EVCP57679 992 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 ODR4Q5SWX8 454 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 RUFY3Q7L099 469 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 GJD3Q8N144 294 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 LENG9Q96B70 501 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 PLAGL2Q9UPG8 496 aa21.69■■□□□ 1.06
COL9A3-206ENST00000466532 DENND3A2RUS2 1198 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 HYAL1Q12794 435 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 TOB2Q14106 344 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-206ENST00000466532 KIZQ2M2Z5 673 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 FAM43BQ6ZT52 329 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-206ENST00000466532 METTL13Q8N6R0 699 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 OSMRQ99650 979 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 SH3GLB2Q9NR46 395 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 ST3GAL5Q9UNP4 418 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 CEP131Q9UPN4 1083 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 PCDHB7Q9Y5E2 793 aa21.68■■□□□ 1.06
COL9A3-206ENST00000466532 WDR64B1ANS9 1081 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 GPR182O15218 404 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 VTNP04004 478 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 LTBRP36941 435 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 CRYBB1P53674 252 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-206ENST00000466532 NLRP5P59047 1200 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 CAMK1Q14012 370 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 NAALADL2Q58DX5 795 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 TRIM22Q8IYM9 498 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 FAM167AQ96KS9 214 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 ADAM2Q99965 735 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 LRFN3Q9BTN0 628 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 ZSWIM6Q9HCJ5 1215 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 RGS18Q9NS28 235 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 C1orf112Q9NSG2 853 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 FAM50BQ9Y247 325 aa21.67■■□□□ 1.06
COL9A3-206ENST00000466532 MSH4O15457 936 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 EDIL3O43854 480 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 ITGB1P05556 798 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 USP11P51784 963 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 CTC1Q2NKJ3 1217 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 TMEM31Q5JXX7 168 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 KLHL23Q8NBE8 558 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 IGFLR1Q9H665 355 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 RNF216Q9NWF9 866 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-206ENST00000466532 CYP46A1Q9Y6A2 500 aa21.66■■□□□ 1.06
COL9A3-206ENST00000466532 PI4K2BG5E9Z4 385 aa21.65■■□□□ 1.06
COL9A3-206ENST00000466532 MAGEB2O15479 319 aa21.65■■□□□ 1.06
COL9A3-206ENST00000466532 EPB41L2O43491 1005 aaKnown RBP21.65■■□□□ 1.06
COL9A3-206ENST00000466532 DNAJB1P25685 340 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms