RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 EYA3Q99504 573 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 CDCA7Q9BWT1 371 aaPredicted RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 POLD4Q9HCU8 107 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 PANK4Q9NVE7 773 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 DDX20Q9UHI6 824 aaKnown RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 PLIN4Q96Q06 1357 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 KDM3AQ9Y4C1 1321 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 C10orf71Q711Q0 1435 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 A0A0A6YYK5 440 aaPredicted RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 FRMD3A2A2Y4 597 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 PGRMC1O00264 195 aaKnown RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 ZPR1O75312 459 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 ERCC3P19447 782 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 CDK8P49336 464 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 ADCY7P51828 1080 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 PPP2R2AP63151 447 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 IRX1P78414 480 aaPredicted RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 SARNPP82979 210 aaKnown RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 PTK2Q05397 1052 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 HLTFQ14527 1009 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS50-208ENST00000458707 LACTB2Q53H82 288 aaPredicted RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 PPP1R18Q6NYC8 613 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 TAX1BP1Q86VP1 789 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 TGFBRAP1Q8WUH2 860 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 P3H4Q92791 437 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 ZKSCAN4Q969J2 545 aaPredicted RBP9.28□□□□□ -0.92
VPS50-208ENST00000458707 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS50-208ENST00000458707 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS50-208ENST00000458707 NT5C3AQ9H0P0 336 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 NEUROG2Q9H2A3 272 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 SLITRK6Q9H5Y7 841 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 FBXL5Q9UKA1 691 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 MTMR7Q9Y216 660 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 STXBP5LQ9Y2K9 1186 aa9.28□□□□□ -0.92
VPS50-208ENST00000458707 TAF1LQ8IZX4 1826 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 SART1O43290 800 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 C21orf2O43822 256 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 LDHCP07864 332 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 HPDP32754 393 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 CTNNA1P35221 906 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 CLK2P49760 499 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 DNA2P51530 1060 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 NPEPPSP55786 919 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 RNASE9P60153 205 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 KCNH2Q12809 1159 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 BYSLQ13895 437 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 PREPLQ4J6C6 727 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 WLSQ5T9L3 541 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 RNF187Q5TA31 235 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 CCDC121Q6ZUS5 278 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 ZNF571Q7Z3V5 609 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 TMC3Q7Z5M5 1100 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 CCDC65Q8IXS2 484 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 TPCN2Q8NHX9 752 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 MAGEC3Q8TD91 643 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 SCFD1Q8WVM8 642 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 HAS1Q92839 578 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 FGFBP2Q9BYJ0 223 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 OSBPL7Q9BZF2 842 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 SLC40A1Q9NP59 571 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 PPANQ9NQ55 473 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 SUCLA2Q9P2R7 463 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 NAGPAQ9UK23 515 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 INTUQ9ULD6 942 aa9.27□□□□□ -0.93
VPS50-208ENST00000458707 TTC7AQ9ULT0 858 aaPredicted RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 NOC2LQ9Y3T9 749 aaKnown RBP9.27□□□□□ -0.93
VPS50-208ENST00000458707 GOLGA6L7A0A1B0GV03 622 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 CEP104O60308 925 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 ASPRV1Q53RT3 343 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 FRMD5Q7Z6J6 570 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 METTL13Q8N6R0 699 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 KHSRPQ92945 711 aaKnown RBP eCLIP9.26□□□□□ -0.935e-8■■■□□ 15.3
VPS50-208ENST00000458707 TATDN2Q93075 761 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 CENPTQ96BT3 561 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 CEP95Q96GE4 821 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 SEC16BQ96JE7 1060 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 NLRP3Q96P20 1036 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 RTFDC1Q9BY42 306 aaPredicted RBP9.26□□□□□ -0.93
VPS50-208ENST00000458707 TXLNGYQ9BZA5 131 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 NYXQ9GZU5 481 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 PITPNM2Q9BZ72 1349 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 QSER1Q2KHR3 1735 aa9.26□□□□□ -0.93
VPS50-208ENST00000458707 RBBP6Q7Z6E9 1792 aaKnown RBP9.26□□□□□ -0.93
VPS50-208ENST00000458707 ZNFX1Q9P2E3 1918 aaKnown RBP9.26□□□□□ -0.93
VPS50-208ENST00000458707 USP17L5A8MUK1 530 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 SNHG28P0DPA3 235 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 GHRP10912 638 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 PDHBP11177 359 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 UCHL3P15374 230 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 GCFC2P16383 781 aaKnown RBP9.25□□□□□ -0.93
VPS50-208ENST00000458707 TM4SF1P30408 202 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 POU5F1Q01860 360 aaKnown RBP9.25□□□□□ -0.93
VPS50-208ENST00000458707 ARID5AQ03989 594 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 XRCC4Q13426 336 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 ADAM9Q13443 819 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 DIXDC1Q155Q3 683 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 QPCTQ16769 361 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 ANKRD20A8PQ5CZ79 823 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 TBC1D9BQ66K14 1250 aa9.25□□□□□ -0.93
VPS50-208ENST00000458707 DDX42Q86XP3 938 aaKnown RBP eCLIP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms