RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CHURC1Q8WUH1 139 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 METTL22Q9BUU2 404 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 TRIM8Q9BZR9 551 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 VPS9D1Q9Y2B5 631 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 DIXDC1Q155Q3 683 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 CABP7Q86V35 215 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 MIGA1Q8NAN2 632 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 ANKRD7Q92527 254 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 TIPINQ9BVW5 301 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 FAM207AQ9NSI2 230 aaPredicted RBP7.68□□□□□ -1.18
VPS53-204ENST00000437048 ADAM30Q9UKF2 790 aa7.68□□□□□ -1.18
VPS53-204ENST00000437048 NCAPD2Q15021 1401 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 VPS41P49754 854 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 NR5A1Q13285 461 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SNX17Q15036 470 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TMCO4Q5TGY1 634 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 C1orf146Q5VVC0 180 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PLBD2Q8NHP8 589 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 VPS33BQ9H267 617 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TMEM245Q9H330 911 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 CAPN11Q9UMQ6 739 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SORCS3Q9UPU3 1222 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 S100A1P23297 94 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 U2AF1L4Q8WU68 220 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 CNOT6LQ96LI5 555 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 ADPGKQ9BRR6 497 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PA2G4Q9UQ80 394 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 ZBTB24O43167 697 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 CCZ1BP86790 482 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 CCZ1P86791 482 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 ASPRV1Q53RT3 343 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SLFN12LQ6IEE8 588 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 DNAJC9Q8WXX5 260 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SYN2Q92777 582 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 AZI2Q9H6S1 392 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 A8MXQ7 604 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 ITPRIPL1Q6GPH6 555 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 CCNJLQ8IV13 435 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 RANBP17Q9H2T7 1088 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 PARVGQ9HBI0 331 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 ETNK1Q9HBU6 452 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 GRIN2AQ12879 1464 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 H0Y3Z8 333 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 STX7O15400 261 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 ATXN3P54252 364 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 YIPF3Q9GZM5 350 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 RASA4BC9J798 803 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 MTSS1O43312 755 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 RASA4O43374 803 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 LDHAP00338 332 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 LETM2Q2VYF4 491 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TRAPPC9Q96Q05 1148 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TAB2Q9NYJ8 693 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 ATP8A1Q9Y2Q0 1164 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SRPRBQ9Y5M8 271 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 CIAO1O76071 339 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 CCDC15Q0P6D6 951 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PYROXD1Q8WU10 500 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 RGL1Q9NZL6 768 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PCDH11XQ9BZA7 1347 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PCDH11YQ9BZA8 1340 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 PRR23D1E9PI22 279 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 PRR23D2P0DMB1 279 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 EHHADHQ08426 723 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 MTHFD1LQ6UB35 978 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 CCDC17Q96LX7 622 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 ANTXR1Q9H6X2 564 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 IRAK4Q9NWZ3 460 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 DMRT2Q9Y5R5 561 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 KDRP35968 1356 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 BACH1O14867 736 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 ARL4AP40617 200 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TRIM16LQ309B1 348 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TNNI3KQ59H18 835 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 MYCT1Q8N699 235 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 LARP4BQ92615 738 aaKnown RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 STOML2Q9UJZ1 356 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 FPGT-TNNI3KV9GXZ4 949 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TBXAS1P24557 533 aaPredicted RBP7.67□□□□□ -1.18
VPS53-204ENST00000437048 CIITAP33076 1130 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 TNFAIP1Q13829 316 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 SLC35F6Q8N357 371 aa7.67□□□□□ -1.18
VPS53-204ENST00000437048 AATKQ6ZMQ8 1374 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TOMM70O94826 608 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 LONRF3Q496Y0 759 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PALB2Q86YC2 1186 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 SSU72P8A0A1W2PR75 194 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 PRLRP16471 622 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RAP1GAPP47736 663 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 ITGA1P56199 1179 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 HAND2P61296 217 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RNF34Q969K3 372 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 TRPC7Q9HCX4 862 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 FANCAO15360 1455 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RNF103-CHMP3A0A140T963 221 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RPSAP08865 295 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 IFNAR1P17181 557 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 POLR2EP19388 210 aaKnown RBP7.66□□□□□ -1.18
VPS53-204ENST00000437048 NOS1P29475 1434 aa7.66□□□□□ -1.18
VPS53-204ENST00000437048 RGS2P41220 211 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms