RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 KRT79Q5XKE5 535 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 TPH2Q8IWU9 490 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 DYDC2Q96IM9 177 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 RNPC3Q96LT9 517 aaKnown RBP16.38■□□□□ 0.21
LIMS1-206ENST00000414829 HSD17B14Q9BPX1 270 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 POLR3CQ9BUI4 534 aaPredicted RBP16.38■□□□□ 0.21
LIMS1-206ENST00000414829 LRWD1Q9UFC0 647 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 SQORQ9Y6N5 450 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 KDM3AQ9Y4C1 1321 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 LTBP2Q14767 1821 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 CEP290O15078 2479 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 ZBTB42B2RXF5 422 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 FGBP02675 491 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 CXCL10P02778 98 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 RPA1P27694 616 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 MRPS6P82932 125 aaKnown RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 TARBP2Q15633 366 aaKnown RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 ATL3Q6DD88 541 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 RUFY4Q6ZNE9 571 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 TRMT1LQ7Z2T5 733 aaKnown RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 METTL13Q8N6R0 699 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 C4orf32Q8N8J7 132 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 IGSF22Q8N9C0 903 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 DNAJB3Q8WWF6 145 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 APBB2Q92870 758 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 SCLYQ96I15 445 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 CEP170P1Q96L14 293 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 ZNF396Q96N95 335 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 FTOQ9C0B1 505 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 FAM49AQ9H0Q0 323 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 CYP26B1Q9NR63 512 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 ANKEF1Q9NU02 776 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 RGL1Q9NZL6 768 aa16.37■□□□□ 0.21
LIMS1-206ENST00000414829 MORC2Q9Y6X9 1032 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-206ENST00000414829 DOCK5Q9H7D0 1870 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 SLITRK3O94933 977 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 CTSHP09668 335 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 ZSCAN22P10073 491 aaPredicted RBP16.36■□□□□ 0.21
LIMS1-206ENST00000414829 POLGP54098 1239 aaPredicted RBP16.36■□□□□ 0.21
LIMS1-206ENST00000414829 MTERF2Q49AM1 385 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 TRAPPC12Q8WVT3 735 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 HERVK_113Q902F9 699 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 SEPT8Q92599 483 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 WNT8BQ93098 351 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 NACC1Q96RE7 527 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 ATP6V1DQ9Y5K8 247 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 TRPV2Q9Y5S1 764 aa16.36■□□□□ 0.21
LIMS1-206ENST00000414829 LONP1P36776 959 aaKnown RBP16.35■□□□□ 0.21
LIMS1-206ENST00000414829 CCT6AP40227 531 aaKnown RBP16.35■□□□□ 0.21
LIMS1-206ENST00000414829 CTTNQ14247 550 aaKnown RBP16.35■□□□□ 0.21
LIMS1-206ENST00000414829 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
LIMS1-206ENST00000414829 LRIT3Q3SXY7 679 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 TMEM240Q5SV17 173 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 EFCAB12Q6NXP0 572 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 ANO5Q75V66 913 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 DEFB128Q7Z7B8 93 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 SNX29Q8TEQ0 813 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 TCP11Q8WWU5 503 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 NT5C3AQ9H0P0 336 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 DAXXQ9UER7 740 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-206ENST00000414829 AKT3Q9Y243 479 aa16.35■□□□□ 0.21
LIMS1-206ENST00000414829 ABHD14A-ACY1A0A1B0GW23 586 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 MAFO75444 373 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-206ENST00000414829 DGAT1O75907 488 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 ANP32AP39687 249 aaKnown RBP16.34■□□□□ 0.21
LIMS1-206ENST00000414829 XKR9Q5GH70 373 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 TRAF7Q6Q0C0 670 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 TSHZ1Q6ZSZ6 1077 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 ZNF365Q70YC5 407 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 CATSPER3Q86XQ3 398 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 KIAA0319LQ8IZA0 1049 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 CDK5RAP3Q96JB5 506 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 SCLT1Q96NL6 688 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIMS1-206ENST00000414829 DBR1Q9UK59 544 aaKnown RBP16.34■□□□□ 0.21
LIMS1-206ENST00000414829 CDY2AQ9Y6F7 541 aa16.34■□□□□ 0.21
LIMS1-206ENST00000414829 VWA3AA6NCI4 1184 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 STBD1O95210 358 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 F13A1P00488 732 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 TXLNAP40222 546 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 KCNJ6P48051 423 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 MGAT3Q09327 533 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 IKBKEQ14164 716 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 SHHQ15465 462 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 HABP4Q5JVS0 413 aaKnown RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 MCPH1Q8NEM0 835 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 PSPC1Q8WXF1 523 aaKnown RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 IFIH1Q9BYX4 1025 aaKnown RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 CELF4Q9BZC1 486 aaKnown RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 DHX33Q9H6R0 707 aaKnown RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 SUGCTQ9HAC7 445 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 ATP6V0A4Q9HBG4 840 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 WRAP73Q9P2S5 460 aaPredicted RBP16.33■□□□□ 0.2
LIMS1-206ENST00000414829 TANC1Q9C0D5 1861 aa16.33■□□□□ 0.2
LIMS1-206ENST00000414829 IGKV6-21A0A0C4DH24 114 aa16.32■□□□□ 0.2
LIMS1-206ENST00000414829 ARHGEF35A5YM69 484 aa16.32■□□□□ 0.2
LIMS1-206ENST00000414829 ZBBXA8MT70 800 aa16.32■□□□□ 0.2
LIMS1-206ENST00000414829 NBNO60934 754 aa16.32■□□□□ 0.2
LIMS1-206ENST00000414829 YEATS4O95619 227 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms