RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SFR1Q86XK3 245 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ANO3Q9BYT9 981 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 PCDHB4Q9Y5E5 795 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ANO9A1A5B4 782 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ATP2C1P98194 919 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 IL9RQ01113 521 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 EVX2Q03828 476 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ICE2Q659A1 982 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 CEP95Q96GE4 821 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 FAM84BQ96KN1 310 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 FAM217BQ9NTX9 383 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 LIMA1Q9UHB6 759 aaKnown RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 DNAJC12Q9UKB3 198 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 EIF4E1BA6NMX2 242 aaKnown RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 HMGB1P1B2RPK0 211 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 H7C0C1 242 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ATP5OP48047 213 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 MFAP3P55082 362 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 SLC8A3P57103 927 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ALX1Q15699 326 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 HEMGNQ9BXL5 484 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 BSDC1Q9NW68 430 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 BAZ2BQ9UIF8 2168 aaKnown RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 SYNJ2BP-COX16A0A087WUM0 186 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 CDC37Q16543 378 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 EAPPQ56P03 285 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 MMS22LQ6ZRQ5 1243 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 GBP5Q96PP8 586 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 COX16Q9P0S2 106 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 BMP3P12645 472 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 ALDH1B1P30837 517 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 STK4Q13043 487 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 PSMD2Q13200 908 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 KRT81Q14533 505 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 NR1I3Q14994 352 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 SLC51AQ86UW1 340 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 FBXL16Q8N461 479 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 BANK1Q8NDB2 785 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 MIPOL1Q8TD10 442 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 N4BP2L2Q92802 583 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 HAUS1Q96CS2 278 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 RAB3IPQ96QF0 476 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 PAGR1Q9BTK6 254 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 TPX2Q9ULW0 747 aaKnown RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 WDR19Q8NEZ3 1342 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 POTEFA5A3E0 1075 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 RNF8O76064 485 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 MMEP08473 750 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 POTEIP0CG38 1075 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 CA4P22748 312 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 PIK3CAP42336 1068 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 YARSP54577 528 aaKnown RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 NTRK3Q16288 839 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 HADHQ16836 314 aaKnown RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 RASIP1Q5U651 963 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 POTEGQ6S5H5 508 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 POTEEQ6S8J3 1075 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 NACC1Q96RE7 527 aa11.62□□□□□ -0.55
CCDC40-204ENST00000397545 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-204ENST00000397545 PABPN1LA6NDY0 278 aaKnown RBP11.61□□□□□ -0.55
CCDC40-204ENST00000397545 OPHN1O60890 802 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 TMEM191BP0C7N4 346 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 PHBP35232 272 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 STAT3P40763 770 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 GCLMP48507 274 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 POLGP54098 1239 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-204ENST00000397545 AOC3Q16853 763 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 AMACRQ9UHK6 382 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 PNMA6FA0A0J9YX94 578 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 H0Y3Z8 333 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 HP1BP3Q5SSJ5 553 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-204ENST00000397545 C10orf76Q5T2E6 689 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 PHLDB3Q6NSJ2 640 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 NLGN1Q8N2Q7 840 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 INTUQ9ULD6 942 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 TRPC6Q9Y210 931 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 USP17L10C9JJH3 530 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 STAM2O75886 525 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 GYPCP04921 128 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 GAP43P17677 238 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 CD58P19256 250 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 COASYQ13057 564 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 MKRN4PQ13434 485 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-204ENST00000397545 BEND6Q5SZJ8 279 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-204ENST00000397545 MIGA2Q7L4E1 593 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 RPAINQ86UA6 219 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 ATP2A3Q93084 1043 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 CEP170P1Q96L14 293 aa11.61□□□□□ -0.55
CCDC40-204ENST00000397545 EXOC1LA0A1B0GW35 172 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 LRRD1A4D1F6 860 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 STK10O94804 968 aaKnown RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 INHBAP08476 426 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 LRRC14Q15048 493 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 BBS9Q3SYG4 887 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 NXNQ6DKJ4 435 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 ANKRD35Q8N283 1001 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 TRIM9Q9C026 710 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CEP72Q9P209 647 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms