RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 HIPK4Q8NE63 616 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 THAP3Q8WTV1 239 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ARMC5Q96C12 935 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 NCOA5Q9HCD5 579 aaKnown RBP3.39□□□□□ -1.87
VPS13A-206ENST00000376646 CDC14BO60729 498 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 STAT3P40763 770 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ECE1P42892 770 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ETV4P43268 484 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 SELENOPP49908 381 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 RAC3P60763 192 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 DPP8Q6V1X1 898 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-206ENST00000376646 LRP10Q7Z4F1 713 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 SLC16A11Q8NCK7 471 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ZSWIM2Q8NEG5 633 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 OR14K1Q8NGZ2 314 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 WNK4Q96J92 1243 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 OR14A2Q96R54 314 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ADOQ96SZ5 270 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 C12orf65Q9H3J6 166 aaKnown RBP3.39□□□□□ -1.87
VPS13A-206ENST00000376646 SEC61A2Q9H9S3 476 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 KCNH7Q9NS40 1196 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 OAZ3Q9UMX2 235 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 CDK11AQ9UQ88 783 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-206ENST00000376646 NR2E1Q9Y466 385 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 TCAF1Q9Y4C2 921 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 PPP1R12AO14974 1030 aaPredicted RBP3.38□□□□□ -1.87
VPS13A-206ENST00000376646 MUSKO15146 869 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 FOXP2O15409 715 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 EFCAB14O75071 495 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 NAT1P18440 290 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 HERVK_113P62684 666 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 IRF9Q00978 393 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 SQSTM1Q13501 440 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 MOGSQ13724 837 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 PCOLCEQ15113 449 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 STILQ15468 1287 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 ZNF568Q3ZCX4 644 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 ZFPM1Q8IX07 1006 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 C2orf69Q8N8R5 385 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 CFHR4Q92496 578 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 OSBPL2Q9H1P3 480 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 OR10A5Q9H207 317 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 FAM184BQ9ULE4 1060 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 B3GALT1Q9Y5Z6 326 aa3.38□□□□□ -1.87
VPS13A-206ENST00000376646 SLC12A8A0AV02 714 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 M0R2C6 588 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 GLRX3O76003 335 aaKnown RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 ZBTB48P10074 688 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 CR2P20023 1033 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 MRE11P49959 708 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 DLG3Q92796 817 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 ZNF747Q9BV97 191 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 BTBD2Q9BX70 525 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 PLA2G12BQ9BX93 195 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 DVL2O14641 736 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 CUTAO60888 179 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 DUSP8Q13202 625 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 EIF4HQ15056 248 aaKnown RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 AGBL4Q5VU57 503 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 IGFL4Q6B9Z1 124 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 BCL6BQ8N143 479 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 MKL1Q969V6 931 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 FOXRED1Q96CU9 486 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 MRPL4Q9BYD3 311 aaKnown RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 VPS11Q9H270 941 aa3.37□□□□□ -1.87
VPS13A-206ENST00000376646 TNPO3Q9Y5L0 923 aaKnown RBP3.37□□□□□ -1.87
VPS13A-206ENST00000376646 A0A0G2JNJ9 132 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 PLSCR1O15162 318 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ARHGAP6O43182 974 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 DNAJC8O75937 253 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 SDSP20132 328 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 TACR2P21452 398 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 RGS3P49796 1198 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 KRTAP10-7P60409 375 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 DGCR2P98153 550 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 C21orf62-AS1Q17RA5 79 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ZMAT1Q5H9K5 638 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ZC3H12BQ5HYM0 836 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 Q6ZSN1 163 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 RTN4RL1Q86UN2 441 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 WDR48Q8TAF3 677 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 TMEM176AQ96HP8 235 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 CDK5RAP1Q96SZ6 601 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 SAMD15Q9P1V8 674 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 Q9UFV3 132 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 GOLGA6L22H0YM25 854 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 KCNQ2O43526 872 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 HIP1RO75146 1068 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 SLPIP03973 132 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ACO1P21399 889 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 COMTP21964 271 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 PTX3P26022 381 aaPredicted RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 MECP2P51608 486 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ATXN1P54253 815 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ADAM15Q13444 863 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 SF3A1Q15459 793 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 TMEM200BQ69YZ2 307 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 TRIM68Q6AZZ1 485 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 GRAMD4Q6IC98 578 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms