RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FAM196AQ6ZSG2 479 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ZNF713Q8N859 430 aaPredicted RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ZNF473Q8WTR7 871 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 SALL1Q9NSC2 1324 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 A0A1W2PQC6 194 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 NOP56O00567 594 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 HNRNPDLO14979 420 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ZBTB5O15062 677 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 IL9RQ01113 521 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 GJB7Q6PEY0 223 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 KMT5AQ9NQR1 393 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 KLHL11Q9NVR0 708 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 MYBP10242 640 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 POLGP54098 1239 aaPredicted RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 PMS1P54277 932 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 YWHAGP61981 247 aaKnown RBP eCLIP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 NLRX1Q86UT6 975 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 DNAAF5Q86Y56 855 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 P3H4Q92791 437 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 EPN3Q9H201 632 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 TAF1DQ9H5J8 278 aaPredicted RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 HPSEQ9Y251 543 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 EIF3HO15372 352 aaKnown RBP eCLIP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ATMINO43313 823 aaPredicted RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 RAD51CO43502 376 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 KCNQ2O43526 872 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 RCAN1P53805 252 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 EARS2Q5JPH6 523 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 PDXDC2PQ6P474 469 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 AMACRQ9UHK6 382 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 LOC102724159A0A0B4J2E5 919 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 TTI1O43156 1089 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ORC4O43929 436 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 SPAG7O75391 227 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 SARNPP82979 210 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 SEPT2Q15019 361 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 PWP2Q15269 919 aaKnown RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 ZNF526Q8TF50 670 aaPredicted RBP7.07□□□□□ -1.28
SMC1A-202ENST00000375340 NT5C1BQ96P26 610 aa7.07□□□□□ -1.28
SMC1A-202ENST00000375340 F5H423 210 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SERPINB2P05120 415 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CD58P19256 250 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GUCY2CP25092 1073 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GCLMP48507 274 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TRAPPC11Q7Z392 1133 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TRIM9Q9C026 710 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 AGLP35573 1532 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TRIM37O94972 964 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 KRT14P02533 472 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 DLGAP5Q15398 846 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GPATCH4Q5T3I0 446 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SERPINB13Q9UIV8 391 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 PHF20L1A8MW92 1017 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CSF1RP07333 972 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 PPP2R5CQ13362 524 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 HIBCHQ6NVY1 386 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CCNI2Q6ZMN8 369 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 C1orf54Q8WWF1 131 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CASKIN2Q8WXE0 1202 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 ZIM3Q96PE6 472 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GBP5Q96PP8 586 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 ACTR5Q9H9F9 607 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TTLL3Q9Y4R7 772 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 DRAP1Q14919 205 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 HSPH1Q92598 858 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 RNPC3Q96LT9 517 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CHORDC1Q9UHD1 332 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 FEZ2Q9UHY8 353 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 USH1CQ9Y6N9 552 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GMNCA6NCL1 334 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 HIP1RO75146 1068 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GCFC2P16383 781 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SAT1P21673 171 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 KCNB1Q14721 858 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SMAD1Q15797 465 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 DGKHQ86XP1 1220 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 DDX42Q86XP3 938 aaKnown RBP eCLIP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 RNF14Q9UBS8 474 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 KNOP1Q1ED39 458 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 MAP7D1Q3KQU3 841 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 RSRC2Q7L4I2 434 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 GLYCTKQ8IVS8 523 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CELF4Q9BZC1 486 aaKnown RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SLC24A3Q9HC58 644 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 EXOC1LA0A1B0GW35 172 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 OPHN1O60890 802 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 ALDH1B1P30837 517 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TAF11Q15544 211 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 PROM2Q8N271 834 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 MAML1Q92585 1016 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 RUNDC3BQ96NL0 473 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 SLC37A4O43826 429 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 TOM1O60784 492 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 AKR1B1P15121 316 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 NKX1-1Q15270 411 aaPredicted RBP7.06□□□□□ -1.28
SMC1A-202ENST00000375340 PPP2R5EQ16537 467 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 CHURC1Q8WUH1 139 aa7.06□□□□□ -1.28
SMC1A-202ENST00000375340 PACSIN1Q9BY11 444 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms