RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ADGRA2Q96PE1 1338 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 BACH1O14867 736 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF500O60304 480 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ADORA2AP29274 412 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 HOXD13P35453 343 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 FKBP3Q00688 224 aaKnown RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 KNOP1Q1ED39 458 aaKnown RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 EDRF1Q3B7T1 1238 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 UTP14CQ5TAP6 766 aaKnown RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ARMCX5Q6P1M9 558 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 METTL7BQ6UX53 244 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 NELFCDQ8IXH7 590 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 VPS16Q9H269 839 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 POLD4Q9HCU8 107 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 DDX41Q9UJV9 622 aaKnown RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 TRAF3IP3Q9Y228 551 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 MAFBQ9Y5Q3 323 aaPredicted RBP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ITIH6Q6UXX5 1313 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 TMEM150BA6NC51 233 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 LGALS16A8MUM7 142 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 SP4Q02446 784 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 PTPN21Q16825 1174 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 OTUD6AQ7L8S5 288 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF467Q7Z7K2 595 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-202ENST00000338045 EEF2KMTQ96G04 330 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 CEP63Q96MT8 703 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 TUBGCP2Q9BSJ2 902 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 PLXNB2O15031 1838 aa17.09■□□□□ 0.33
LIMS1-202ENST00000338045 UBE4BO95155 1302 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 IGF2BP3O00425 579 aaKnown RBP eCLIP17.08■□□□□ 0.33
LIMS1-202ENST00000338045 ARIH2O95376 493 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 GCNT3O95395 438 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 SLC10A3P09131 477 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 MAPTP10636 758 aaKnown RBP17.08■□□□□ 0.33
LIMS1-202ENST00000338045 XKR9Q5GH70 373 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 PLA2G4FQ68DD2 849 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 CCDC62Q6P9F0 684 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 EEPD1Q7L9B9 569 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF720Q7Z2F6 126 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 FAM178BQ8IXR5 827 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 CCDC43Q96MW1 224 aaKnown RBP17.08■□□□□ 0.33
LIMS1-202ENST00000338045 STRA6Q9BX79 667 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 IVNS1ABPQ9Y6Y0 642 aa17.08■□□□□ 0.33
LIMS1-202ENST00000338045 GSTTP1A0A1W2PQM5 241 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 PDXKO00764 312 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 USO1O60763 962 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 PPP1R37O75864 691 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 PRPF6O94906 941 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 BRD2P25440 801 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 NPEPPSP55786 919 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 PRKCEQ02156 737 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 GRB14Q14449 540 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 ODR4Q5SWX8 454 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 GPR142Q7Z601 462 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 KIAA1524Q8TCG1 905 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 LARSQ9P2J5 1176 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 PYCARDQ9ULZ3 195 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 TLL2Q9Y6L7 1015 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 SORBS3O60504 671 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 GGPS1O95749 300 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 SFPQP23246 707 aaKnown RBP eCLIP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 NMT1P30419 496 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 MAPK4P31152 587 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 MARSP56192 900 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 CCZ1BP86790 482 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 CCZ1P86791 482 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 LY6KQ17RY6 165 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 XKR3Q5GH77 459 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 ARMCX2Q7L311 632 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 CREBRFQ8IUR6 639 aa17.07■□□□□ 0.32
LIMS1-202ENST00000338045 FBXO16Q8IX29 292 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 TYW1Q9NV66 732 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 DIS3Q9Y2L1 958 aaKnown RBP17.07■□□□□ 0.32
LIMS1-202ENST00000338045 A0A1W2PQC6 194 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 PLS3P13797 630 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 ATP4AP20648 1035 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 DNM2P50570 870 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 INHBEP58166 350 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 MIIPQ5JXC2 388 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 CELF3Q5SZQ8 465 aaKnown RBP17.06■□□□□ 0.32
LIMS1-202ENST00000338045 STXBP4Q6ZWJ1 553 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 AFAP1L1Q8TED9 768 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 SEPT1Q8WYJ6 367 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 CEP170P1Q96L14 293 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 DRC1Q96MC2 740 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 PCYT2Q99447 389 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 SH2D3AQ9BRG2 576 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 ZNF302Q9NR11 478 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 PDLIM7Q9NR12 457 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 MCM3APO60318 1980 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 PLXNA1Q9UIW2 1896 aa17.06■□□□□ 0.32
LIMS1-202ENST00000338045 MYH11P35749 1972 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 GNA14O95837 355 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 MTIF2P46199 727 aaKnown RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 NFIL3Q16649 462 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 MAMDC4Q6UXC1 1216 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 PLEKHH3Q7Z736 793 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 ST6GALNAC4Q9H4F1 302 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 PCDHB13Q9Y5F0 798 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 ARID2Q68CP9 1835 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms