RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 M0R296 226 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 MEIS1O00470 390 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 BACH1O14867 736 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 GPR182O15218 404 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 KLRC1P26715 233 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 ADCY7P51828 1080 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 PTPN5P54829 565 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 ZXDAP98168 799 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 AP3B2Q13367 1082 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 ZNF484Q5JVG2 852 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 SLC24A5Q71RS6 500 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 RBM23Q86U06 439 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 MICU3Q86XE3 530 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 ATP8B4Q8TF62 1192 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 EVPLQ92817 2033 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 PBXIP1Q96AQ6 731 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 AGO4Q9HCK5 861 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 PLXNA4Q9HCM2 1894 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 ERVK-5Q9HDB9 667 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 RGS18Q9NS28 235 aa16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 USP15Q9Y4E8 981 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-201ENST00000301897 TBKBP1A7MCY6 615 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 SLC27A2O14975 620 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 GLP2RO95838 553 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 ARP10275 920 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 ZNF76P36508 570 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 SREBF1P36956 1147 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 ITGB3BPQ13352 177 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM266Q2M3C6 531 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 WWC2Q6AWC2 1192 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 CYP2W1Q8TAV3 490 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 NEK1Q96PY6 1258 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 ADAM2Q99965 735 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 ANO3Q9BYT9 981 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 LSG1Q9H089 658 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 BARX2Q9UMQ3 279 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 GINS2Q9Y248 185 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 LZTS1Q9Y250 596 aa16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 MYH9P35579 1960 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-201ENST00000301897 CNTNAP5Q8WYK1 1306 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 HOXA2O43364 376 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 PPFIA3O75145 1194 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 FGF18O76093 207 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 LAG3P18627 525 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 CRYBB1P53674 252 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 RNF20Q5VTR2 975 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 MIS18BP1Q6P0N0 1132 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 PDXDC2PQ6P474 469 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 ABHD15Q6UXT9 468 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 THNSL1Q8IYQ7 743 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 KIAA0319LQ8IZA0 1049 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 ZNF710Q8N1W2 664 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 ELAC1Q9H777 363 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 ATP6V0A4Q9HBG4 840 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM161AQ9NX61 479 aa16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 PUF60Q9UHX1 559 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 NOC2LQ9Y3T9 749 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-201ENST00000301897 C9IYK1 514 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 GATMP50440 423 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 SIGLEC14Q08ET2 396 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 DUSP6Q16828 381 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 CREB3L3Q68CJ9 461 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 MCTP2Q6DN12 878 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 APOA5Q6Q788 366 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 FBXL6Q8N531 539 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 COLGALT1Q8NBJ5 622 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 RASGRP4Q8TDF6 673 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 SUSD6Q92537 303 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 IRF2BPLQ9H1B7 796 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 ZNF302Q9NR11 478 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM260Q9NX78 707 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 BARHL2Q9NY43 387 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 TCEAL9Q9UHQ7 104 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 ST3GAL5Q9UNP4 418 aa16.8■□□□□ 0.28
CCDC88B-201ENST00000301897 SMCO2A6NFE2 343 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 MGEA5O60502 916 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 IBSPP21815 317 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 PPM1AP35813 382 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 FAM189BP81408 668 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 NECTIN1Q15223 517 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 RTN1Q16799 776 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM184AQ6ZMB5 413 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 RAB11FIP4Q86YS3 637 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 BBXQ8WY36 941 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 RPGRIP1Q96KN7 1286 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 ESYT1Q9BSJ8 1104 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 LRRC2Q9BYS8 371 aa16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 NGRNQ9NPE2 291 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 TYW1Q9NV66 732 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-201ENST00000301897 ZFHX2Q9C0A1 2572 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 IPO5O00410 1097 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 FSCN2O14926 492 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 ZBTB43O43298 467 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 CCNE2O96020 404 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 HOXB8P17481 243 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 CLK2P49760 499 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 PLCB3Q01970 1234 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 FAM102BQ5T8I3 360 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 ZNF746Q6NUN9 644 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 PLA2G4DQ86XP0 818 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms