RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MORC2Q9Y6X9 1032 aaPredicted RBP12.68□□□□□ -0.38
VPS4A-201ENST00000254950 ANKRD62A6NC57 917 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 RBL2Q08999 1139 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 ANKRD40Q6AI12 368 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 SLFN12LQ6IEE8 588 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 HAUS6Q7Z4H7 955 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 JAKMIP2Q96AA8 810 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 RUFY1Q96T51 708 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 C1orf112Q9NSG2 853 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 SPDYE16A6NNV3 312 aaPredicted RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 KRT19P08727 400 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 ACTR2P61160 394 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 PRKCEQ02156 737 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 DGKZQ13574 1117 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 XXYLT1Q8NBI6 393 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 POLR3FQ9H1D9 316 aaPredicted RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 AGO4Q9HCK5 861 aaKnown RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 CYP3A7-CYP3A51PA0A087WV96 503 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 GH1P01241 217 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 PGK2P07205 417 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 CYP3A7P24462 503 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 NMT1P30419 496 aaKnown RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 RRP1BQ14684 758 aaKnown RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 RSPH3Q86UC2 560 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 RIOX2Q8IUF8 465 aa12.67□□□□□ -0.38
VPS4A-201ENST00000254950 TNRC6CQ9HCJ0 1690 aaKnown RBP12.67□□□□□ -0.38
VPS4A-201ENST00000254950 ZC3H4Q9UPT8 1303 aaKnown RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 AKAP11Q9UKA4 1901 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MANSC4A6NHS7 340 aaPredicted RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 PDXKO00764 312 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 TNNC2P02585 160 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 TMEM191BP0C7N4 346 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 ZBED6P86452 979 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MFSD14CQ5VZR4 134 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 PPM1KQ8N3J5 372 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MSANTD4Q8NCY6 345 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 SMARCAD1Q9H4L7 1026 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 PHLPP2Q6ZVD8 1323 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MACROD2A1Z1Q3 448 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 HOXD10P28358 340 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MXI1P50539 228 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MAPK6Q16659 721 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 INTS8Q75QN2 995 aaKnown RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MTMR8Q96EF0 704 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 KCNMB3Q9NPA1 279 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MYH7P12883 1935 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 WNT7AO00755 349 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 MAPK4P31152 587 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 CKAP4Q07065 602 aaKnown RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 PRPF4BQ13523 1007 aaKnown RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 NPY5RQ15761 445 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 PLEKHH3Q7Z736 793 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 NLRP7Q8WX94 980 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 CTNNBL1Q8WYA6 563 aaPredicted RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 EPN1Q9Y6I3 576 aaPredicted RBP12.66□□□□□ -0.38
VPS4A-201ENST00000254950 ZNF831Q5JPB2 1677 aa12.66□□□□□ -0.38
VPS4A-201ENST00000254950 A0A087X0B3 334 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 ZNF233A6NK53 670 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 CYP2B6P20813 491 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 TMEM132BQ14DG7 1078 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 NOL9Q5SY16 702 aaKnown RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 PLA2G4FQ68DD2 849 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 RINT1Q6NUQ1 792 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 NT5C1BQ96P26 610 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 PNMA5Q96PV4 448 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 NUDT12Q9BQG2 462 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 DESI2Q9BSY9 194 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 IFIH1Q9BYX4 1025 aaKnown RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.65□□□□□ -0.384e-8■■■■■ 206.4
VPS4A-201ENST00000254950 PYCARDQ9ULZ3 195 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 LY75O60449 1722 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 PPP1R3GB7ZBB8 358 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 NPEPPSP55786 919 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 GOLGA8FQ08AF8 430 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 GOLGA8DPQ0D2H9 430 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 DPH6Q7L8W6 267 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 OTOP1Q7RTM1 612 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 OR6J1Q8NGC5 347 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 HAS1Q92839 578 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 PLVAPQ9BX97 442 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 FAM49AQ9H0Q0 323 aaPredicted RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 UBR3Q6ZT12 1888 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 GOLGA8IPA6NC78 632 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 GOLGA8JA6NMD2 632 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 JAG1P78504 1218 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 HSP90B2PQ58FF3 399 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 CHADLQ6NUI6 762 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 MTERF4Q7Z6M4 381 aaKnown RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 KIAA1586Q9HCI6 787 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 GCNT4Q9P109 453 aa12.65□□□□□ -0.38
VPS4A-201ENST00000254950 CGNQ9P2M7 1197 aaKnown RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 LIMA1Q9UHB6 759 aaKnown RBP12.65□□□□□ -0.38
VPS4A-201ENST00000254950 BRWD3Q6RI45 1802 aa12.65□□□□□ -0.39
VPS4A-201ENST00000254950 STRNO43815 780 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 ZNF500O60304 480 aaPredicted RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 LDHAP00338 332 aaKnown RBP12.64□□□□□ -0.39
VPS4A-201ENST00000254950 MYL3P08590 195 aa12.64□□□□□ -0.39
VPS4A-201ENST00000254950 CYP2C8P10632 490 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms