RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SMARCAD1Q9H4L7 1026 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 ERAP1Q9NZ08 941 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 TRPC6Q9Y210 931 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 MAFBQ9Y5Q3 323 aaPredicted RBP15.21■□□□□ 0.03
LINC00540-202ENST00000616974 IGSF9BQ9UPX0 1349 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 WDR64B1ANS9 1081 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 RAG1P15918 1043 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 GRIN1Q05586 938 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PPFIA1Q13136 1202 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PTGDRQ13258 359 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 POTEB3A0JP26 581 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 C17orf102A2RUQ5 167 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 CTSHP09668 335 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 TECP42680 631 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PRKCEQ02156 737 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 TMEM62Q0P6H9 643 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PPP2R5CQ13362 524 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 CTTNQ14247 550 aaKnown RBP15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PRPF38BQ5VTL8 546 aaKnown RBP15.2■□□□□ 0.02
LINC00540-202ENST00000616974 PLA2G4FQ68DD2 849 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 POTEBQ6S5H4 581 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 IL27Q8NEV9 243 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 AFAP1L1Q8TED9 768 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 KATNAL1Q9BW62 490 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 AZI2Q9H6S1 392 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.2■□□□□ 0.02
LINC00540-202ENST00000616974 BMP2KQ9NSY1 1161 aaPredicted RBP15.2■□□□□ 0.02
LINC00540-202ENST00000616974 ZNF215Q9UL58 517 aaPredicted RBP15.2■□□□□ 0.02
LINC00540-202ENST00000616974 MROH7Q68CQ1 1323 aa15.2■□□□□ 0.02
LINC00540-202ENST00000616974 STX6O43752 255 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 TIMP1P01033 207 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 ECM1Q16610 540 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 MIS18BP1Q6P0N0 1132 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 PLPPR4Q7Z2D5 763 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 SERINC5Q86VE9 423 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 DYDC2Q96IM9 177 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 PPP1R16BQ96T49 567 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 NOD1Q9Y239 953 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 PSAPP07602 524 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 CEBPZQ03701 1054 aaKnown RBP15.19■□□□□ 0.02
LINC00540-202ENST00000616974 DRP2Q13474 957 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 ZNF618Q5T7W0 954 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 SMAP1Q8IYB5 467 aaPredicted RBP15.19■□□□□ 0.02
LINC00540-202ENST00000616974 ZNF668Q96K58 619 aaPredicted RBP15.19■□□□□ 0.02
LINC00540-202ENST00000616974 FAM20AQ96MK3 541 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 ZDHHC9Q9Y397 364 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 KIF3AQ9Y496 699 aa15.19■□□□□ 0.02
LINC00540-202ENST00000616974 MARCH6O60337 910 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 CKBP12277 381 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 NPEPPSP55786 919 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 ANO5Q75V66 913 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 DEFB128Q7Z7B8 93 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 CKAP2LQ8IYA6 745 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 PRKAG2Q9UGJ0 569 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 TUBE1Q9UJT0 475 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 PCDHA12Q9UN75 941 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 CLIC4Q9Y696 253 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 MICAL3Q7RTP6 2002 aa15.18■□□□□ 0.02
LINC00540-202ENST00000616974 HSP90AA1P07900 732 aaKnown RBP15.17■□□□□ 0.02
LINC00540-202ENST00000616974 OR52Z1P0C646 297 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 ATP8B4Q8TF62 1192 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 DNAJB3Q8WWF6 145 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 CEP89Q96ST8 783 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 LXNQ9BS40 222 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 FAM49AQ9H0Q0 323 aaPredicted RBP15.17■□□□□ 0.02
LINC00540-202ENST00000616974 TBX3O15119 743 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 TLR3O15455 904 aaKnown RBP15.17■□□□□ 0.02
LINC00540-202ENST00000616974 NBNO60934 754 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 MED24O75448 989 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 SLITRK3O94933 977 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 THPOP40225 353 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 LRRC71Q8N4P6 559 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 EIF2AK1Q9BQI3 630 aaKnown RBP15.17■□□□□ 0.02
LINC00540-202ENST00000616974 TCEAL9Q9UHQ7 104 aa15.17■□□□□ 0.02
LINC00540-202ENST00000616974 MBLAC1A4D2B0 266 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 OATP04181 439 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 SPATA31C1P0DKV0 1188 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 JAK3P52333 1124 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 SHHQ15465 462 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 FAM109BQ6ICB4 259 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 MFSD5Q6N075 450 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 CDHR5Q9HBB8 845 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 CXXC1Q9P0U4 656 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 DAXXQ9UER7 740 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 NRCAMQ92823 1304 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 C5orf42Q9H799 3197 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 C22orf31O95567 290 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 IQCF3P0C7M6 154 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 KLRC1P26715 233 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 TRAPPC10P48553 1259 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 CLCN3P51790 818 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 PTPN11Q06124 597 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 FAM160B1Q5W0V3 765 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 MTHFD1LQ6UB35 978 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 TMCO2Q7Z6W1 182 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-202ENST00000616974 PIGOQ8TEQ8 1089 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 LRRC15Q8TF66 581 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 USP28Q96RU2 1077 aa15.16■□□□□ 0.02
LINC00540-202ENST00000616974 HSD17B14Q9BPX1 270 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms