RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PPP2R2DQ66LE6 453 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 ZNF746Q6NUN9 644 aaPredicted RBP13.78□□□□□ -0.2
LIG1-217ENST00000599165 SWSAP1Q6NVH7 229 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 TAF2Q6P1X5 1199 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 CPLX2Q6PUV4 134 aaKnown RBP13.78□□□□□ -0.2
LIG1-217ENST00000599165 POTEBQ6S5H4 581 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 ATP8B4Q8TF62 1192 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 TNFRSF25Q93038 417 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 AZI2Q9H6S1 392 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 ZNF302Q9NR11 478 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 TBC1D22BQ9NU19 505 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 TRPC6Q9Y210 931 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 IGSF9BQ9UPX0 1349 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 REV3LO60673 3130 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 VCANP13611 3396 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 RRN3P2A6NIE6 340 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 RFXAPO00287 272 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 SLC37A4O43826 429 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 ZNF862O60290 1169 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 PSMD10O75832 226 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 GHRP10912 638 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 KCNJ6P48051 423 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 SLC26A2P50443 739 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 IKBKEQ14164 716 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 ANKRD1Q15327 319 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 UGCGQ16739 394 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 INF2Q27J81 1249 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 FBXO47Q5MNV8 452 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 GALNT17Q6IS24 598 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 MIS18BP1Q6P0N0 1132 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 MTHFD1LQ6UB35 978 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 ETNPPLQ8TBG4 499 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 UNC45AQ9H3U1 944 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 AGO3Q9H9G7 860 aaKnown RBP13.77□□□□□ -0.21
LIG1-217ENST00000599165 ORC3Q9UBD5 711 aaPredicted RBP13.77□□□□□ -0.21
LIG1-217ENST00000599165 PCDHA2Q9Y5H9 948 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 CDY2AQ9Y6F7 541 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 A0A0C4DFX4 3053 aa13.77□□□□□ -0.21
LIG1-217ENST00000599165 BRWD1Q9NSI6 2320 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 ATG2AQ2TAZ0 1938 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 NLRC5Q86WI3 1866 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 SPTBN5Q9NRC6 3674 aaKnown RBP13.76□□□□□ -0.21
LIG1-217ENST00000599165 BACH1O14867 736 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 CDKL5O76039 1030 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 MRPS6P82932 125 aaKnown RBP13.76□□□□□ -0.21
LIG1-217ENST00000599165 HTRA4P83105 476 aaPredicted RBP13.76□□□□□ -0.21
LIG1-217ENST00000599165 KRT76Q01546 638 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 PDXDC2PQ6P474 469 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 MOXD1Q6UVY6 613 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 SMAP1Q8IYB5 467 aaPredicted RBP13.76□□□□□ -0.21
LIG1-217ENST00000599165 SLC17A8Q8NDX2 589 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 LINC01599Q8WXQ3 324 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 SEPT8Q92599 483 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 RIT2Q99578 217 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 FAM49AQ9H0Q0 323 aaPredicted RBP13.76□□□□□ -0.21
LIG1-217ENST00000599165 CERS4Q9HA82 394 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 PCDHA10Q9Y5I2 948 aa13.76□□□□□ -0.21
LIG1-217ENST00000599165 COL1A2P08123 1366 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 SMIM35A0A1B0GVV1 85 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 WNT7AO00755 349 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 TLL1O43897 1013 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 HBP1O60381 514 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 LPXNO60711 386 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 EFCAB14O75071 495 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 STBD1O95210 358 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 C22orf31O95567 290 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 KLRC1P26715 233 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 TMEM62Q0P6H9 643 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 NR5A1Q13285 461 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 NONOQ15233 471 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIG1-217ENST00000599165 FAM160B1Q5W0V3 765 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 FAM117BQ6P1L5 589 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 KRT25Q7Z3Z0 450 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 KIAA0319LQ8IZA0 1049 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 LINC01465Q8N7H1 131 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 SP7Q8TDD2 431 aaPredicted RBP13.75□□□□□ -0.21
LIG1-217ENST00000599165 IFIH1Q9BYX4 1025 aaKnown RBP13.75□□□□□ -0.21
LIG1-217ENST00000599165 C22orf23Q9BZE7 217 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 PRDM6Q9NQX0 595 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 GABBR1Q9UBS5 961 aa13.75□□□□□ -0.21
LIG1-217ENST00000599165 KDM3AQ9Y4C1 1321 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 LINC01553A4QN01 128 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 WDR64B1ANS9 1081 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 PSAPP07602 524 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 LRCH2Q5VUJ6 765 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 KRT40Q6A162 431 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 RTN4RL1Q86UN2 441 aaPredicted RBP13.74□□□□□ -0.21
LIG1-217ENST00000599165 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIG1-217ENST00000599165 MYOCDQ8IZQ8 938 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 CRIPAKQ8N1N5 446 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 TMEM40Q8WWA1 233 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 BBXQ8WY36 941 aaPredicted RBP13.74□□□□□ -0.21
LIG1-217ENST00000599165 TOP1MTQ969P6 601 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 CEP89Q96ST8 783 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 CDHR5Q9HBB8 845 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 KCNMB3Q9NPA1 279 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 DISC1Q9NRI5 854 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 VAV3Q9UKW4 847 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 TTC28Q96AY4 2481 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 MYO7AQ13402 2215 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms