RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SLC26A2P50443 739 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 BTG3Q14201 252 aaPredicted RBP27.27■■□□□ 1.96
LSM4-202ENST00000593564 TMEM31Q5JXX7 168 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 POTEBQ6S5H4 581 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 TRAPPC12Q8WVT3 735 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 TMEM260Q9NX78 707 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 MYO7AQ13402 2215 aa27.26■■□□□ 1.96
LSM4-202ENST00000593564 IGSF9BQ9UPX0 1349 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 IGKV6D-21A0A0A0MT36 114 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 PI4K2BG5E9Z4 385 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 H3BQ06 376 aaPredicted RBP27.26■■□□□ 1.95
LSM4-202ENST00000593564 HMGB1P09429 215 aaKnown RBP27.26■■□□□ 1.95
LSM4-202ENST00000593564 CDC27P30260 824 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 GJD3Q8N144 294 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 CRIPAKQ8N1N5 446 aa27.26■■□□□ 1.95
LSM4-202ENST00000593564 KDM3AQ9Y4C1 1321 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 SMIM35A0A1B0GVV1 85 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 GRM6O15303 877 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 NCK2O43639 380 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 CDC45O75419 566 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 CCNE2O96020 404 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 ZNF76P36508 570 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 TMEM62Q0P6H9 643 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 RTN4RL1Q86UN2 441 aaPredicted RBP27.25■■□□□ 1.95
LSM4-202ENST00000593564 NME8Q8N427 588 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 PLVAPQ9BX97 442 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 CELF4Q9BZC1 486 aaKnown RBP27.25■■□□□ 1.95
LSM4-202ENST00000593564 PADI3Q9ULW8 664 aa27.25■■□□□ 1.95
LSM4-202ENST00000593564 GPR37L1O60883 481 aa27.24■■□□□ 1.95
LSM4-202ENST00000593564 PFKFB3Q16875 520 aaPredicted RBP27.24■■□□□ 1.95
LSM4-202ENST00000593564 MTHFD1LQ6UB35 978 aa27.24■■□□□ 1.95
LSM4-202ENST00000593564 NPAS4Q8IUM7 802 aa27.24■■□□□ 1.95
LSM4-202ENST00000593564 PLA2G5P39877 138 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 PAK2Q13177 524 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 FAM160B1Q5W0V3 765 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 ABHD15Q6UXT9 468 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 CMTR2Q8IYT2 770 aaKnown RBP27.23■■□□□ 1.95
LSM4-202ENST00000593564 C11orf16Q9NQ32 467 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 CLDND1Q9NY35 253 aa27.23■■□□□ 1.95
LSM4-202ENST00000593564 CCDC196A0A1B0GTZ2 297 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 FAM86B1E9PN63 330 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 HBP1O60381 514 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 MMP1P03956 469 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 CYP3A4P08684 503 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 FAM86B2P0C5J1 330 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 ADD1P35611 737 aaKnown RBP27.22■■□□□ 1.95
LSM4-202ENST00000593564 KRT76Q01546 638 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 JAKMIP3Q5VZ66 844 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 EP400NLQ6ZTU2 488 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 ATP8B4Q8TF62 1192 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 CRYGNQ8WXF5 182 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 FAM50BQ9Y247 325 aa27.22■■□□□ 1.95
LSM4-202ENST00000593564 IGLV3-22A0A075B6J6 115 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 ESYT2A0FGR8 921 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 DDX39AO00148 427 aaKnown RBP27.21■■□□□ 1.95
LSM4-202ENST00000593564 BACH1O14867 736 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 STAG3L1P0CL83 205 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 SCG2P13521 617 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 KLRC1P26715 233 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 SSTR3P32745 418 aaPredicted RBP27.21■■□□□ 1.95
LSM4-202ENST00000593564 METAP2P50579 478 aaKnown RBP eCLIP27.21■■□□□ 1.95
LSM4-202ENST00000593564 FGD1P98174 961 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 CTC1Q2NKJ3 1217 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 FAM43BQ6ZT52 329 aaPredicted RBP27.21■■□□□ 1.95
LSM4-202ENST00000593564 PLA2G4DQ86XP0 818 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 P2RX5Q93086 422 aa27.21■■□□□ 1.95
LSM4-202ENST00000593564 NAP1L2Q9ULW6 460 aaPredicted RBP27.21■■□□□ 1.95
LSM4-202ENST00000593564 MRPL42Q9Y6G3 142 aaKnown RBP27.21■■□□□ 1.95
LSM4-202ENST00000593564 DHX15O43143 795 aaKnown RBP27.2■■□□□ 1.94
LSM4-202ENST00000593564 LTBRP36941 435 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 HYAL1Q12794 435 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 NAALADL2Q58DX5 795 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 MIS18BP1Q6P0N0 1132 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 CCDC60Q8IWA6 550 aaPredicted RBP27.2■■□□□ 1.94
LSM4-202ENST00000593564 KCNB2Q92953 911 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 ZMYND12Q9H0C1 365 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 TMX1Q9H3N1 280 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 ZNF302Q9NR11 478 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 PLAGL2Q9UPG8 496 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 HCN4Q9Y3Q4 1203 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 ARIH1Q9Y4X5 557 aaPredicted RBP27.2■■□□□ 1.94
LSM4-202ENST00000593564 COL1A2P08123 1366 aa27.2■■□□□ 1.94
LSM4-202ENST00000593564 IPO5O00410 1097 aaKnown RBP27.19■■□□□ 1.94
LSM4-202ENST00000593564 MCTP2Q6DN12 878 aa27.19■■□□□ 1.94
LSM4-202ENST00000593564 PDXDC2PQ6P474 469 aa27.19■■□□□ 1.94
LSM4-202ENST00000593564 FAM122AQ96E09 287 aa27.19■■□□□ 1.94
LSM4-202ENST00000593564 PRKAG3Q9UGI9 489 aa27.19■■□□□ 1.94
LSM4-202ENST00000593564 ATG2AQ2TAZ0 1938 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 FAM86C2PA6NEL3 165 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 CPA1P15085 419 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 SETQ01105 290 aaPredicted RBP27.18■■□□□ 1.94
LSM4-202ENST00000593564 APOBRQ0VD83 1088 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 ZNF484Q5JVG2 852 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 KIAA0319LQ8IZA0 1049 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 CCDC12Q8WUD4 166 aaPredicted RBP27.18■■□□□ 1.94
LSM4-202ENST00000593564 C6orf50Q9HD87 102 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 ALG13Q9NP73 1137 aaKnown RBP27.18■■□□□ 1.94
LSM4-202ENST00000593564 NID2Q14112 1375 aa27.18■■□□□ 1.94
LSM4-202ENST00000593564 ZP2Q05996 745 aa27.17■■□□□ 1.94
LSM4-202ENST00000593564 CAMK1Q14012 370 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms