RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, human

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA4-208	ENST00000585799	HIP1R	O75146	1068 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MYCN	P04198	464 aa	Predicted RBP	13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PSMC2	P35998	433 aa	Known RBP	13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CASP5	P51878	434 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KLHL7	Q8IXQ5	586 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PPM1K	Q8N3J5	372 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SCFD1	Q8WVM8	642 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	UNC45A	Q9H3U1	944 aa		13.64	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NRAP	Q86VF7	1730 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LRP5	O75197	1615 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GJC1	P36383	396 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	STAT1	P42224	750 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GRM1	Q13255	1194 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ADAT2	Q7Z6V5	191 aa	Known RBP	13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GLG1	Q92896	1179 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MRI	Q9BWK5	157 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LACRT	Q9GZZ8	138 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CEP104	O60308	925 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ATP1A1	P05023	1023 aa	Known RBP	13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GAP43	P17677	238 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GIT2	Q14161	759 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DLK2	Q6UY11	383 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GPR161	Q8N6U8	529 aa	Known RBP	13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	METTL14	Q9HCE5	456 aa	Known RBP	13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	LRRIQ4	A6NIV6	560 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	RINT1	Q6NUQ1	792 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GJB7	Q6PEY0	223 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	IFT74	Q96LB3	600 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PSMD1	Q99460	953 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GPRC5C	Q9NQ84	441 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	RNF181	Q9P0P0	153 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MYO1A	Q9UBC5	1043 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ITIH6	Q6UXX5	1313 aa		13.63	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MYH6	P13533	1939 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	POTEB2	H3BUK9	544 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EPHB6	O15197	1021 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	WDR46	O15213	610 aa	Known RBP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ZNF185	O15231	689 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KCNJ6	P48051	423 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GCLM	P48507	274 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TMEM119	Q4V9L6	283 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	OTUD5	Q96G74	571 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NKRF	O15226	690 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	VAV2	P52735	878 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SUPT20HL1	Q3ZLR7	823 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SWSAP1	Q6NVH7	229 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SYT2	Q8N9I0	419 aa	Predicted RBP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TRIM58	Q8NG06	486 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	POMGNT1	Q8WZA1	660 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SMARCAL1	Q9NZC9	954 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GABBR1	Q9UBS5	961 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	HNRNPDL	O14979	420 aa	Known RBP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	VCAM1	P19320	739 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MARK3	P27448	753 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	FKBP1A	P62942	108 aa	Known RBP	13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	C2orf54	Q08AI8	447 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EPHA7	Q15375	998 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MUM1L1	Q5H9M0	696 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TMEM139	Q8IV31	216 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	FNBP1	Q96RU3	617 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MXRA8	Q9BRK3	442 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	WDR18	Q9BV38	432 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KIFC3	Q9BVG8	833 aa		13.62	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NOP56	O00567	594 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CTIF	O43310	598 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TADA3	O75528	432 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	QARS	P47897	775 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	GNPTAB	Q3T906	1256 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	NAA35	Q5VZE5	725 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CCDC170	Q8IYT3	715 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	ZNF280C	Q8ND82	737 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	IL31RA	Q8NI17	732 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DNAJC19	Q96DA6	116 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SAAL1	Q96ER3	474 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	RGS17	Q9UGC6	210 aa	Predicted RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	FAM184B	Q9ULE4	1060 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SRCAP	Q6ZRS2	3230 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TBX3	O15119	743 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TNNI1	P19237	187 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MYL7	Q01449	175 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	COG2	Q14746	738 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	WHAMMP3	Q1A5X7	153 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MAP9	Q49MG5	647 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CYFIP1	Q7L576	1253 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	CEP63	Q96MT8	703 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TRIM31	Q9BZY9	425 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KCNMB3	Q9NPA1	279 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	TYW1	Q9NV66	732 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	MRFAP1	Q9Y605	127 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	EP400	Q96L91	3159 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	KCNK3	O14649	394 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PEX10	O60683	326 aa		13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	P4HB	P07237	508 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	SET	Q01105	290 aa	Predicted RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	DNAJC21	Q5F1R6	531 aa	Known RBP	13.61	□□□□□ -0.23
SMARCA4-208	ENST00000585799	PHLDB2	Q86SQ0	1253 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms