RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 CELF4Q9BZC1 486 aaKnown RBP18.68■□□□□ 0.58
VPS53-215ENST00000573028 GCOM1H8Y6P7 765 aaPredicted RBP18.68■□□□□ 0.58
VPS53-215ENST00000573028 MYO1FO00160 1098 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 DAPK3O43293 454 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 MYZAPP0CAP1 466 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 ABCB4P21439 1286 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 USP11P51784 963 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 SF3A3Q12874 501 aaKnown RBP eCLIP18.68■□□□□ 0.58
VPS53-215ENST00000573028 IFT88Q13099 833 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 EPN3Q9H201 632 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 NEUROG2Q9H2A3 272 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 DNM3Q9UQ16 869 aa18.68■□□□□ 0.58
VPS53-215ENST00000573028 FLT3P36888 993 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 ZNF473Q8WTR7 871 aaKnown RBP18.67■□□□□ 0.58
VPS53-215ENST00000573028 CCT8L2Q96SF2 557 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 GCNT4Q9P109 453 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 PGRMC1O00264 195 aaKnown RBP18.67■□□□□ 0.58
VPS53-215ENST00000573028 TMOD1P28289 359 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 MDH1P40925 334 aaKnown RBP18.67■□□□□ 0.58
VPS53-215ENST00000573028 GABPAQ06546 454 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 PTGISQ16647 500 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 DOK7Q18PE1 504 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 KNOP1Q1ED39 458 aaKnown RBP18.67■□□□□ 0.58
VPS53-215ENST00000573028 MMS22LQ6ZRQ5 1243 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 BHMT2Q9H2M3 363 aa18.67■□□□□ 0.58
VPS53-215ENST00000573028 FLOT1O75955 427 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 H2AFZP0C0S5 128 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 SLC12A3P55017 1021 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 GIT2Q14161 759 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 GPATCH4Q5T3I0 446 aaKnown RBP18.66■□□□□ 0.58
VPS53-215ENST00000573028 H2AFVQ71UI9 128 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 NLRP14Q86W24 1093 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 TBC1D22AQ8WUA7 517 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 FBXL5Q9UKA1 691 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 SHMT1P34896 483 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 COPB2P35606 906 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 ISCUQ9H1K1 167 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 GAKO14976 1311 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 TTI1O43156 1089 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 IFI16Q16666 785 aaKnown RBP18.66■□□□□ 0.58
VPS53-215ENST00000573028 PPP1R18Q6NYC8 613 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 VPS36Q86VN1 386 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 TPCN2Q8NHX9 752 aa18.66■□□□□ 0.58
VPS53-215ENST00000573028 TNRC6CQ9HCJ0 1690 aaKnown RBP18.66■□□□□ 0.58
VPS53-215ENST00000573028 NOVP48745 357 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 ARHGAP4P98171 946 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 NFIAQ12857 509 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 EDRF1Q3B7T1 1238 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 ARHGAP27Q6ZUM4 889 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 KSR1Q8IVT5 923 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 COL5A3P25940 1745 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 HMGB1P1B2RPK0 211 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 MEFVO15553 781 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 ATP2C2O75185 946 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 TBCAO75347 108 aaKnown RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 CPP00450 1065 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 NR3C1P04150 777 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 HOXA13P31271 388 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 HNRNPH1P31943 449 aaKnown RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 MARSP56192 900 aaKnown RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 SAMD1Q6SPF0 538 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 MYCBPAPQ8TBZ2 947 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 PIGOQ8TEQ8 1089 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 FAM163AQ96GL9 167 aaPredicted RBP18.65■□□□□ 0.58
VPS53-215ENST00000573028 RGL1Q9NZL6 768 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 BCS1LQ9Y276 419 aa18.65■□□□□ 0.58
VPS53-215ENST00000573028 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.64■□□□□ 0.58
VPS53-215ENST00000573028 HOXD13P35453 343 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 HSPA9P38646 679 aaKnown RBP18.64■□□□□ 0.58
VPS53-215ENST00000573028 ITGB3BPQ13352 177 aaPredicted RBP18.64■□□□□ 0.58
VPS53-215ENST00000573028 UAP1Q16222 522 aaPredicted RBP18.64■□□□□ 0.58
VPS53-215ENST00000573028 ZFPM1Q8IX07 1006 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 MREGQ8N565 214 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 CYP2W1Q8TAV3 490 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 PBKQ96KB5 322 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 OSGEPQ9NPF4 335 aa18.64■□□□□ 0.58
VPS53-215ENST00000573028 MYH7BA7E2Y1 1941 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 A6NNZ2 444 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 G3V3G9 751 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 CHMP2AO43633 222 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 ZNF76P36508 570 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 TUBB8Q3ZCM7 444 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 HYIQ5T013 277 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 DCAF8Q5TAQ9 597 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 GLYCTKQ8IVS8 523 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 RBM17Q96I25 401 aaKnown RBP18.64■□□□□ 0.57
VPS53-215ENST00000573028 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.64■□□□□ 0.579e-7■■□□□ 12.3
VPS53-215ENST00000573028 KCNMB3Q9NPA1 279 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 NOVA2Q9UNW9 492 aaKnown RBP18.64■□□□□ 0.57
VPS53-215ENST00000573028 WNK3Q9BYP7 1800 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 IGKV6D-41A0A0C4DH26 115 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 CALUO43852 315 aaPredicted RBP18.64■□□□□ 0.57
VPS53-215ENST00000573028 HLA-DOAP06340 250 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 PPP4R3CPQ6ZMV5 832 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 ERMNQ8TAM6 284 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 IPO4Q8TEX9 1081 aaKnown RBP18.64■□□□□ 0.57
VPS53-215ENST00000573028 LRRC45Q96CN5 670 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 P2RX7Q99572 595 aaKnown RBP18.64■□□□□ 0.57
VPS53-215ENST00000573028 TRIM51Q9BSJ1 452 aa18.64■□□□□ 0.57
VPS53-215ENST00000573028 TMBIM4Q9HC24 238 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms