RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 CCDC12Q8WUD4 166 aaPredicted RBP19.19■□□□□ 0.66
CLN3-231ENST00000568422 PABPC5Q96DU9 382 aaKnown RBP19.19■□□□□ 0.66
CLN3-231ENST00000568422 KDM3AQ9Y4C1 1321 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 ATG2AQ2TAZ0 1938 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 ESYT2A0FGR8 921 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 CYP3A4P08684 503 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 SCG2P13521 617 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 CDC27P30260 824 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 CD52P31358 61 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 METAP2P50579 478 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLN3-231ENST00000568422 BTG3Q14201 252 aaPredicted RBP19.18■□□□□ 0.66
CLN3-231ENST00000568422 TCEAL5Q5H9L2 206 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 PTCRAQ6ISU1 281 aaPredicted RBP19.18■□□□□ 0.66
CLN3-231ENST00000568422 FAM178BQ8IXR5 827 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 KCNB2Q92953 911 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 PLVAPQ9BX97 442 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 CELF4Q9BZC1 486 aaKnown RBP19.18■□□□□ 0.66
CLN3-231ENST00000568422 AGO3Q9H9G7 860 aaKnown RBP19.18■□□□□ 0.66
CLN3-231ENST00000568422 TMEM260Q9NX78 707 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 FAM50BQ9Y247 325 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 IGSF9BQ9UPX0 1349 aa19.18■□□□□ 0.66
CLN3-231ENST00000568422 GRXCR2A6NFK2 248 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 HBP1O60381 514 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 LINC00271P0C7V0 271 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 STAG3L1P0CL83 205 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 KRT76Q01546 638 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 PAK2Q13177 524 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 MTHFD1LQ6UB35 978 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 ABHD15Q6UXT9 468 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 NPAS4Q8IUM7 802 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 CRIPAKQ8N1N5 446 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 FBXL16Q8N461 479 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 ZMYND12Q9H0C1 365 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 EPHX3Q9H6B9 360 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 C6orf50Q9HD87 102 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 RNF216Q9NWF9 866 aaPredicted RBP19.17■□□□□ 0.66
CLN3-231ENST00000568422 NAP1L2Q9ULW6 460 aaPredicted RBP19.17■□□□□ 0.66
CLN3-231ENST00000568422 PADI3Q9ULW8 664 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 COL1A2P08123 1366 aa19.17■□□□□ 0.66
CLN3-231ENST00000568422 FAM86B1E9PN63 330 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 IPO5O00410 1097 aaKnown RBP19.16■□□□□ 0.66
CLN3-231ENST00000568422 BACH1O14867 736 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 CCNE2O96020 404 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 FAM86B2P0C5J1 330 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 ADD1P35611 737 aaKnown RBP19.16■□□□□ 0.66
CLN3-231ENST00000568422 SETQ01105 290 aaPredicted RBP19.16■□□□□ 0.66
CLN3-231ENST00000568422 NAALADL2Q58DX5 795 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 JAKMIP3Q5VZ66 844 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 MIS18BP1Q6P0N0 1132 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 SKAP1Q86WV1 359 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 PLA2G4DQ86XP0 818 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 CMTR2Q8IYT2 770 aaKnown RBP19.16■□□□□ 0.66
CLN3-231ENST00000568422 ATP8B4Q8TF62 1192 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 TRAPPC12Q8WVT3 735 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 CRYGNQ8WXF5 182 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 ZBTB10Q96DT7 871 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 TBC1D22BQ9NU19 505 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 EVPLQ92817 2033 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 NID2Q14112 1375 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 KIAA1671Q9BY89 1806 aa19.16■□□□□ 0.66
CLN3-231ENST00000568422 IGLV3-22A0A075B6J6 115 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 PI4K2BG5E9Z4 385 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 PRPF3O43395 683 aaKnown RBP19.15■□□□□ 0.66
CLN3-231ENST00000568422 KLRC1P26715 233 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 GNA11P29992 359 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 TMEM62Q0P6H9 643 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 ZNF484Q5JVG2 852 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 TMEM31Q5JXX7 168 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 ODR4Q5SWX8 454 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 Q6ZUG5 572 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 RTN4RL1Q86UN2 441 aaPredicted RBP19.15■□□□□ 0.66
CLN3-231ENST00000568422 GJD3Q8N144 294 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 LINC01599Q8WXQ3 324 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 P2RX5Q93086 422 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 ZNF302Q9NR11 478 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 WDR81Q562E7 1941 aa19.15■□□□□ 0.66
CLN3-231ENST00000568422 DDX39AO00148 427 aaKnown RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 GRM6O15303 877 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 DHX15O43143 795 aaKnown RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 GPR37L1O60883 481 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 MMP1P03956 469 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 HSPA4P34932 840 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 APOBRQ0VD83 1088 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 PDXDC2PQ6P474 469 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 BLOC1S2Q6QNY1 142 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 SMAP1Q8IYB5 467 aaPredicted RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 REXO1Q8N1G1 1221 aaKnown RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 BICD2Q8TD16 824 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 JAKMIP1Q96N16 626 aaKnown RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 ZNF577Q9BSK1 485 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 CD320Q9NPF0 282 aa19.14■□□□□ 0.65
CLN3-231ENST00000568422 ARIH1Q9Y4X5 557 aaPredicted RBP19.14■□□□□ 0.65
CLN3-231ENST00000568422 H3BQ06 376 aaPredicted RBP19.13■□□□□ 0.65
CLN3-231ENST00000568422 IL9P15248 144 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 AKAP17AQ02040 695 aaKnown RBP19.13■□□□□ 0.65
CLN3-231ENST00000568422 CTC1Q2NKJ3 1217 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 ZNF746Q6NUN9 644 aaPredicted RBP19.13■□□□□ 0.65
CLN3-231ENST00000568422 CCDC60Q8IWA6 550 aaPredicted RBP19.13■□□□□ 0.65
CLN3-231ENST00000568422 KIAA0319LQ8IZA0 1049 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 BRF1Q92994 677 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms