RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FTHL17Q9BXU8 183 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 RWDD3Q9Y3V2 267 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 TRPV2Q9Y5S1 764 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 ADGRA3Q8IWK6 1321 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 KDM3AQ9Y4C1 1321 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 IGLV3-22A0A075B6J6 115 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 FAM86B1E9PN63 330 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 DGKIO75912 1065 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 FAM86B2P0C5J1 330 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 SCG2P13521 617 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 CPA1P15085 419 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 CTNNB1P35222 781 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 ZNF76P36508 570 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 METAP2P50579 478 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-216ENST00000565316 TCEAL5Q5H9L2 206 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 MTHFD1LQ6UB35 978 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 CELF4Q9BZC1 486 aaKnown RBP19.5■□□□□ 0.71
CLN3-216ENST00000565316 ZMYND12Q9H0C1 365 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 LMAN2LQ9H0V9 348 aa19.5■□□□□ 0.71
CLN3-216ENST00000565316 NSUN3Q9H649 340 aaKnown RBP19.5■□□□□ 0.71
CLN3-216ENST00000565316 RALGAPA2Q2PPJ7 1873 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 IGSF9BQ9UPX0 1349 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 HSPA4P34932 840 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 APOBRQ0VD83 1088 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 PKN1Q16512 942 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 PUS10Q3MIT2 529 aaKnown RBP19.49■□□□□ 0.71
CLN3-216ENST00000565316 JAKMIP3Q5VZ66 844 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 MCTP2Q6DN12 878 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 FAM43BQ6ZT52 329 aaPredicted RBP19.49■□□□□ 0.71
CLN3-216ENST00000565316 PLA2G4DQ86XP0 818 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 ATP8B4Q8TF62 1192 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 PABPC5Q96DU9 382 aaKnown RBP19.49■□□□□ 0.71
CLN3-216ENST00000565316 C11orf84Q9BUA3 381 aaPredicted RBP19.49■□□□□ 0.71
CLN3-216ENST00000565316 EPHX3Q9H6B9 360 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 CD320Q9NPF0 282 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 PADI3Q9ULW8 664 aa19.49■□□□□ 0.71
CLN3-216ENST00000565316 NLRC5Q86WI3 1866 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 M0QZ92 97 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 ADAMTS3O15072 1205 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 PRPF3O43395 683 aaKnown RBP19.48■□□□□ 0.71
CLN3-216ENST00000565316 HBP1O60381 514 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 FGD1P98174 961 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 TMEM62Q0P6H9 643 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 BTG3Q14201 252 aaPredicted RBP19.48■□□□□ 0.71
CLN3-216ENST00000565316 FAM160B1Q5W0V3 765 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 Q6ZUG5 572 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 CCDC60Q8IWA6 550 aaPredicted RBP19.48■□□□□ 0.71
CLN3-216ENST00000565316 FAM178BQ8IXR5 827 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 KHSRPQ92945 711 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-216ENST00000565316 PLVAPQ9BX97 442 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 AGXT2Q9BYV1 514 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 RAPGEFL1Q9UHV5 662 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 SNX14Q9Y5W7 946 aa19.48■□□□□ 0.71
CLN3-216ENST00000565316 MYO7AQ13402 2215 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 GRXCR2A6NFK2 248 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 ZBTB42B2RXF5 422 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 IPO5O00410 1097 aaKnown RBP19.47■□□□□ 0.71
CLN3-216ENST00000565316 GRM6O15303 877 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 KLRC1P26715 233 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 PTCRAQ6ISU1 281 aaPredicted RBP19.47■□□□□ 0.71
CLN3-216ENST00000565316 NPAS4Q8IUM7 802 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 KIAA0319LQ8IZA0 1049 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 CCDC12Q8WUD4 166 aaPredicted RBP19.47■□□□□ 0.71
CLN3-216ENST00000565316 BRF1Q92994 677 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 JAKMIP1Q96N16 626 aaKnown RBP19.47■□□□□ 0.71
CLN3-216ENST00000565316 C6orf50Q9HD87 102 aa19.47■□□□□ 0.71
CLN3-216ENST00000565316 NAP1L2Q9ULW6 460 aaPredicted RBP19.47■□□□□ 0.71
CLN3-216ENST00000565316 COL1A2P08123 1366 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 DDX39AO00148 427 aaKnown RBP19.46■□□□□ 0.71
CLN3-216ENST00000565316 BACH1O14867 736 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 NCK2O43639 380 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 ATP4AP20648 1035 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 KRT76Q01546 638 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 PAK2Q13177 524 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 NTRK3Q16288 839 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 ZNF484Q5JVG2 852 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 BLOC1S2Q6QNY1 142 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 CMTR2Q8IYT2 770 aaKnown RBP19.46■□□□□ 0.71
CLN3-216ENST00000565316 REXO1Q8N1G1 1221 aaKnown RBP19.46■□□□□ 0.71
CLN3-216ENST00000565316 TMX1Q9H3N1 280 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 ZNF302Q9NR11 478 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 TBC1D22BQ9NU19 505 aa19.46■□□□□ 0.71
CLN3-216ENST00000565316 PI4K2BG5E9Z4 385 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 H3BQ06 376 aaPredicted RBP19.45■□□□□ 0.7
CLN3-216ENST00000565316 IL9P15248 144 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 RPS6KB1P23443 525 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 GNA11P29992 359 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 CIITAP33076 1130 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 SETQ01105 290 aaPredicted RBP19.45■□□□□ 0.7
CLN3-216ENST00000565316 CTC1Q2NKJ3 1217 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 ZNF746Q6NUN9 644 aaPredicted RBP19.45■□□□□ 0.7
CLN3-216ENST00000565316 SWSAP1Q6NVH7 229 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 MIS18BP1Q6P0N0 1132 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 PDXDC2PQ6P474 469 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 P2RX5Q93086 422 aa19.45■□□□□ 0.7
CLN3-216ENST00000565316 MAFBQ9Y5Q3 323 aaPredicted RBP19.45■□□□□ 0.7
CLN3-216ENST00000565316 MRPL42Q9Y6G3 142 aaKnown RBP19.45■□□□□ 0.7
CLN3-216ENST00000565316 STAG3L1P0CL83 205 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 LTBRP36941 435 aa19.44■□□□□ 0.7
CLN3-216ENST00000565316 EVCP57679 992 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms