RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PAN2Q504Q3 1202 aaKnown RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 RNF20Q5VTR2 975 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 PPP1R18Q6NYC8 613 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 DHX32Q7L7V1 743 aaKnown RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 CRIPAKQ8N1N5 446 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 TNPO1Q92973 898 aaKnown RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 UIMC1Q96RL1 719 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 CELF4Q9BZC1 486 aaKnown RBP19.24■□□□□ 0.67
CLN3-211ENST00000564091 IGFLR1Q9H665 355 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 PLAGL2Q9UPG8 496 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 COL4A6Q14031 1691 aa19.24■□□□□ 0.67
CLN3-211ENST00000564091 SIP14410 1827 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 NCK2O43639 380 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 ATG7O95352 703 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 CCNE2O96020 404 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 RPLP2P05387 115 aaKnown RBP19.23■□□□□ 0.67
CLN3-211ENST00000564091 ZNF76P36508 570 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 GATMP50440 423 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 ZP2Q05996 745 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 PAK2Q13177 524 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 CAMK1Q14012 370 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 ADCK5Q3MIX3 580 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 MTHFD1LQ6UB35 978 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 NPAS4Q8IUM7 802 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 FTHL17Q9BXU8 183 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 FAM217BQ9NTX9 383 aaPredicted RBP19.23■□□□□ 0.67
CLN3-211ENST00000564091 BARHL2Q9NY43 387 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 SQORQ9Y6N5 450 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 IGSF9BQ9UPX0 1349 aa19.23■□□□□ 0.67
CLN3-211ENST00000564091 SMIM35A0A1B0GVV1 85 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 GOLGA8AA7E2F4 631 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 GOLGA8BA8MQT2 603 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 BACH1O14867 736 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 ALADP13716 330 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 DNAJB1P25685 340 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 CDC27P30260 824 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 SREBF1P36956 1147 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 KRT76Q01546 638 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 NFX1Q12986 1120 aaKnown RBP19.22■□□□□ 0.67
CLN3-211ENST00000564091 JAKMIP3Q5VZ66 844 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 CMTR2Q8IYT2 770 aaKnown RBP19.22■□□□□ 0.67
CLN3-211ENST00000564091 PLVAPQ9BX97 442 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 TMX1Q9H3N1 280 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 FAM50BQ9Y247 325 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 GINS2Q9Y248 185 aa19.22■□□□□ 0.67
CLN3-211ENST00000564091 IGKV6D-21A0A0A0MT36 114 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 KLF18A0A0U1RQI7 1052 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 FAM86B1E9PN63 330 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 LINC01565O15544 149 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 MMP1P03956 469 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 FAM86B2P0C5J1 330 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 SCG2P13521 617 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 KLRC1P26715 233 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 CLK2P49760 499 aaKnown RBP19.21■□□□□ 0.67
CLN3-211ENST00000564091 AP3B2Q13367 1082 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 BMP2KLQ5H9B9 411 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 ABHD15Q6UXT9 468 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 NME8Q8N427 588 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 CDHR5Q9HBB8 845 aa19.21■□□□□ 0.67
CLN3-211ENST00000564091 NAP1L2Q9ULW6 460 aaPredicted RBP19.21■□□□□ 0.67
CLN3-211ENST00000564091 ARIH1Q9Y4X5 557 aaPredicted RBP19.21■□□□□ 0.67
CLN3-211ENST00000564091 DOCK5Q9H7D0 1870 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 PRR33A8MZF0 331 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 ADAMTS3O15072 1205 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 DCXO43602 365 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 ITGB1P05556 798 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 STAG3L1P0CL83 205 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 IRS1P35568 1242 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 ADD1P35611 737 aaKnown RBP19.2■□□□□ 0.66
CLN3-211ENST00000564091 PLA2G4DQ86XP0 818 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 CCDC60Q8IWA6 550 aaPredicted RBP19.2■□□□□ 0.66
CLN3-211ENST00000564091 TEX2Q8IWB9 1127 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 ADHFE1Q8IWW8 467 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 KIAA0319LQ8IZA0 1049 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 KLHL23Q8NBE8 558 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 SPPL3Q8TCT6 385 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 ATP8B4Q8TF62 1192 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 PRKAG3Q9UGI9 489 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 KDM3AQ9Y4C1 1321 aa19.2■□□□□ 0.66
CLN3-211ENST00000564091 C19orf67A6NJJ6 358 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 hCG_1984214I3L0E3 225 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 DHX15O43143 795 aaKnown RBP19.19■□□□□ 0.66
CLN3-211ENST00000564091 MBTPS2O43462 519 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 HBP1O60381 514 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 TBX10O75333 385 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 SLC26A2P50443 739 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 TSGA10IPQ3SY00 556 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 SWSAP1Q6NVH7 229 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 PDXDC2PQ6P474 469 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 ADGRD2Q7Z7M1 963 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 ZNF713Q8N859 430 aaPredicted RBP19.19■□□□□ 0.66
CLN3-211ENST00000564091 P2RX5Q93086 422 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 GLT8D2Q9H1C3 349 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 ZNF302Q9NR11 478 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 LRFN2Q9ULH4 789 aa19.19■□□□□ 0.66
CLN3-211ENST00000564091 NOC2LQ9Y3T9 749 aaKnown RBP19.19■□□□□ 0.66
CLN3-211ENST00000564091 MGEA5O60502 916 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 PPFIA3O75145 1194 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 CPA1P15085 419 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 ATP4AP20648 1035 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms