RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 EVPLQ92817 2033 aa17.94■□□□□ 0.46
CLK3-211ENST00000563297 CCDC196A0A1B0GTZ2 297 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 SMIM35A0A1B0GVV1 85 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 ADAMTS3O15072 1205 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 DHX15O43143 795 aaKnown RBP17.93■□□□□ 0.46
CLK3-211ENST00000563297 DGKIO75912 1065 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 CYP3A4P08684 503 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 SCG2P13521 617 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 SLC26A2P50443 739 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 METAP2P50579 478 aaKnown RBP eCLIP17.93■□□□□ 0.46
CLK3-211ENST00000563297 FGD1P98174 961 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 TMEM62Q0P6H9 643 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 TIGD5Q53EQ6 642 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 TCEAL5Q5H9L2 206 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 MTHFD1LQ6UB35 978 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 Q6ZUG5 572 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 PLA2G4DQ86XP0 818 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 CRIPAKQ8N1N5 446 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 NME8Q8N427 588 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 LINC01599Q8WXQ3 324 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 KHSRPQ92945 711 aaKnown RBP eCLIP17.93■□□□□ 0.46
CLK3-211ENST00000563297 CLP1Q92989 425 aaKnown RBP17.93■□□□□ 0.46
CLK3-211ENST00000563297 CELF4Q9BZC1 486 aaKnown RBP17.93■□□□□ 0.46
CLK3-211ENST00000563297 ZMYND12Q9H0C1 365 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 PADI3Q9ULW8 664 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 ADGRA3Q8IWK6 1321 aa17.93■□□□□ 0.46
CLK3-211ENST00000563297 IGLV3-22A0A075B6J6 115 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 DDX39AO00148 427 aaKnown RBP17.92■□□□□ 0.46
CLK3-211ENST00000563297 KLRC1P26715 233 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 CTNNB1P35222 781 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 PKN1Q16512 942 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 FAM178BQ8IXR5 827 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 NEK9Q8TD19 979 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 BRF1Q92994 677 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 FTHL17Q9BXU8 183 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 SNX14Q9Y5W7 946 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 IGSF9BQ9UPX0 1349 aa17.92■□□□□ 0.46
CLK3-211ENST00000563297 ESYT2A0FGR8 921 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 M0QZ92 97 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 GRM6O15303 877 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 PRPF3O43395 683 aaKnown RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 HBP1O60381 514 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 ATP4AP20648 1035 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 HSPA4P34932 840 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 BTG3Q14201 252 aaPredicted RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 COL19A1Q14993 1142 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 CCDC60Q8IWA6 550 aaPredicted RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 PABPC5Q96DU9 382 aaKnown RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 JAKMIP1Q96N16 626 aaKnown RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 UIMC1Q96RL1 719 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 NSUN3Q9H649 340 aaKnown RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 RWDD3Q9Y3V2 267 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 MYH9P35579 1960 aaKnown RBP17.91■□□□□ 0.46
CLK3-211ENST00000563297 KDM3AQ9Y4C1 1321 aa17.91■□□□□ 0.46
CLK3-211ENST00000563297 GRXCR2A6NFK2 248 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 H3BQ06 376 aaPredicted RBP17.9■□□□□ 0.46
CLK3-211ENST00000563297 IPO5O00410 1097 aaKnown RBP17.9■□□□□ 0.46
CLK3-211ENST00000563297 BACH1O14867 736 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 IL9P15248 144 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 KRT76Q01546 638 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 FAM160B1Q5W0V3 765 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 MCTP2Q6DN12 878 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 PTCRAQ6ISU1 281 aaPredicted RBP17.9■□□□□ 0.46
CLK3-211ENST00000563297 SWSAP1Q6NVH7 229 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 PDXDC2PQ6P474 469 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 BLOC1S2Q6QNY1 142 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 KIAA0319LQ8IZA0 1049 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 FBXL16Q8N461 479 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 ATP8B4Q8TF62 1192 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 C11orf84Q9BUA3 381 aaPredicted RBP17.9■□□□□ 0.46
CLK3-211ENST00000563297 AGXT2Q9BYV1 514 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 LMAN2LQ9H0V9 348 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 CDHR5Q9HBB8 845 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 C6orf50Q9HD87 102 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 ZNF302Q9NR11 478 aa17.9■□□□□ 0.46
CLK3-211ENST00000563297 ZBTB42B2RXF5 422 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 NTRK3Q16288 839 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 ZNF484Q5JVG2 852 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 MIS18BP1Q6P0N0 1132 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 NPAS4Q8IUM7 802 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 PHKBQ93100 1093 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 ZNF577Q9BSK1 485 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 TMX1Q9H3N1 280 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 TBC1D22BQ9NU19 505 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 ATG2AQ2TAZ0 1938 aa17.89■□□□□ 0.45
CLK3-211ENST00000563297 PI4K2BG5E9Z4 385 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 RPS6KB1P23443 525 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 PAK2Q13177 524 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 TMEM266Q2M3C6 531 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 PUS10Q3MIT2 529 aaKnown RBP17.88■□□□□ 0.45
CLK3-211ENST00000563297 EP400NLQ6ZTU2 488 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 CMTR2Q8IYT2 770 aaKnown RBP17.88■□□□□ 0.45
CLK3-211ENST00000563297 GJD3Q8N144 294 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 REXO1Q8N1G1 1221 aaKnown RBP17.88■□□□□ 0.45
CLK3-211ENST00000563297 CCDC12Q8WUD4 166 aaPredicted RBP17.88■□□□□ 0.45
CLK3-211ENST00000563297 LRFN3Q9BTN0 628 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 PLVAPQ9BX97 442 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 PLAGL2Q9UPG8 496 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 MAFBQ9Y5Q3 323 aaPredicted RBP17.88■□□□□ 0.45
CLK3-211ENST00000563297 MRPL42Q9Y6G3 142 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms