RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ADPGKQ9BRR6 497 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 XPO4Q9C0E2 1151 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 POLR3FQ9H1D9 316 aaPredicted RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 SETD4Q9NVD3 440 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ADCY3O60266 1144 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 LRRN2O75325 713 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 GJB1P08034 283 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ITGB5P18084 799 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 KRT9P35527 623 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 TERF1P54274 439 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ADKP55263 362 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PSMC5P62195 406 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 RNASELQ05823 741 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 CCDC173Q0VFZ6 552 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 MORC3Q14149 939 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 SKIDA1Q1XH10 827 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 RESP18Q5W5W9 173 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 SAPCD2Q86UD0 394 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PPM1KQ8N3J5 372 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PROCA1Q8NCQ7 364 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 AK8Q96MA6 479 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ARHGAP39Q9C0H5 1083 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 MROH8Q9H579 483 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PCDH10Q9P2E7 1040 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 KCNH4Q9UQ05 1017 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PFASO15067 1338 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 IGF2BP3O00425 579 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 LAD1O00515 517 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 GH1P01241 217 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PRKAR2AP13861 404 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 MAPK4P31152 587 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 IRX5P78411 483 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 FSTL1Q12841 308 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PRPF4BQ13523 1007 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 CCDC144BQ3MJ40 725 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ARL6IP4Q66PJ3 421 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 LBX2Q6XYB7 198 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PHLDB2Q86SQ0 1253 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ABI1Q8IZP0 508 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 IGSF22Q8N9C0 903 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 MLKLQ8NB16 471 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 NEK11Q8NG66 645 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 PSPC1Q8WXF1 523 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ST7Q9NRC1 585 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 RBPJLQ9UBG7 517 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 ARMCX3Q9UH62 379 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 NUB1Q9Y5A7 615 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 TJP1Q07157 1748 aa5.99□□□□□ -1.45
VPS13C-209ENST00000560637 BAZ2AQ9UIF9 1905 aaKnown RBP5.99□□□□□ -1.45
VPS13C-209ENST00000560637 MYMKA6NI61 221 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ABL1P00519 1130 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 SSTR3P32745 418 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 JAK3P52333 1124 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 PRKCZQ05513 592 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 FUT2Q10981 343 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 STK4Q13043 487 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 LLGL1Q15334 1064 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 SPA17Q15506 151 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TAF3Q5VWG9 929 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 FMR1NBQ8N0W7 255 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 RAD54LQ92698 747 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 GLT1D1Q96MS3 346 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 DEFB118Q96PH6 123 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 REEP2Q9BRK0 252 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 RANBP17Q9H2T7 1088 aaKnown RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ATP11BQ9Y2G3 1177 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TAF1LQ8IZX4 1826 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 PRRC2BQ5JSZ5 2229 aaKnown RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 SDK1Q7Z5N4 2213 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 CALUO43852 315 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TMEM191BP0C7N4 346 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TRIM49P0CI25 452 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TRIM49CP0CI26 452 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 CYP2C9P11712 490 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 XRCC5P13010 732 aaKnown RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 CD58P19256 250 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 SREBF1P36956 1147 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 PRCPP42785 496 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ACOT2P49753 483 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 NLRP11P59045 1033 aaKnown RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 COASYQ13057 564 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 HSDL1Q3SXM5 330 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 CST9Q5W186 159 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 DEFB128Q7Z7B8 93 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 METTL16Q86W50 562 aaKnown RBP5.98□□□□□ -1.45
VPS13C-209ENST00000560637 MAP3K14Q99558 947 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 FAM213AQ9BRX8 229 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ZBED2Q9BTP6 218 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 R3HDMLQ9H3Y0 253 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ATP6V0A4Q9HBG4 840 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 LZTFL1Q9NQ48 299 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 EXOC7Q9UPT5 735 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 TUBGCP6Q96RT7 1819 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 MYPNQ86TC9 1320 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 IRS2Q9Y4H2 1338 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 KCNJ18B7U540 433 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ZEB2O60315 1214 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 EVCP57679 992 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 ACVR2BQ13705 512 aa5.98□□□□□ -1.45
VPS13C-209ENST00000560637 KCNJ12Q14500 433 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms