RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 NSUN3Q9H649 340 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 AGO3Q9H9G7 860 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 RC3H2Q9HBD1 1191 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 TRPV2Q9Y5S1 764 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 SQORQ9Y6N5 450 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 IGKV6D-21A0A0A0MT36 114 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 SMIM35A0A1B0GVV1 85 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 FAM86B1E9PN63 330 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 C5orf67F2Z3F1 127 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 BACH1O14867 736 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 DGKIO75912 1065 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 CCNE2O96020 404 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 FAM86B2P0C5J1 330 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 SCG2P13521 617 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 BMPR1AP36894 532 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 PAK2Q13177 524 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 TCEAL5Q5H9L2 206 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 MTHFD1LQ6UB35 978 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 ABHD15Q6UXT9 468 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 EP400NLQ6ZTU2 488 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 PLA2G4DQ86XP0 818 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 CCDC12Q8WUD4 166 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 ZNF689Q96CS4 500 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 JAKMIP1Q96N16 626 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 C11orf84Q9BUA3 381 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 CELF4Q9BZC1 486 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 EPHX3Q9H6B9 360 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 C6orf50Q9HD87 102 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 RAPGEFL1Q9UHV5 662 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 PADI3Q9ULW8 664 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 IGSF9BQ9UPX0 1349 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 MYO7AQ13402 2215 aa12.6□□□□□ -0.39
CCDC88C-213ENST00000557455 ESYT2A0FGR8 921 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 HBP1O60381 514 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 CYP3A4P08684 503 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 KLRC1P26715 233 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 HSPA4P34932 840 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 KRT76Q01546 638 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 PUS10Q3MIT2 529 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 MCTP2Q6DN12 878 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 PTCRAQ6ISU1 281 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 MIS18BP1Q6P0N0 1132 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 BLOC1S2Q6QNY1 142 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 RTN4RL1Q86UN2 441 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 REXO1Q8N1G1 1221 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 NEK9Q8TD19 979 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 ATP8B4Q8TF62 1192 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 LINC01599Q8WXQ3 324 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 KCNB2Q92953 911 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 CLP1Q92989 425 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 BRF1Q92994 677 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 PABPC5Q96DU9 382 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 ZMYND12Q9H0C1 365 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 LMAN2LQ9H0V9 348 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 ZNF302Q9NR11 478 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 SNX14Q9Y5W7 946 aa12.59□□□□□ -0.39
CCDC88C-213ENST00000557455 COL1A2P08123 1366 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 IGLV3-22A0A075B6J6 115 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 GRXCR2A6NFK2 248 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 H3BQ06 376 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 IPO5O00410 1097 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 GRM6O15303 877 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 DHX15O43143 795 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 PRPF3O43395 683 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 LINC00271P0C7V0 271 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 STAG3L1P0CL83 205 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 IL9P15248 144 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 GNA11P29992 359 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 SETQ01105 290 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 AKAP17AQ02040 695 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 FNDC1Q4ZHG4 1894 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 SWSAP1Q6NVH7 229 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 PDXDC2PQ6P474 469 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 NPAS4Q8IUM7 802 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 CCDC60Q8IWA6 550 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 FAM178BQ8IXR5 827 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 CRYGNQ8WXF5 182 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 UIMC1Q96RL1 719 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 ZNF577Q9BSK1 485 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 PLVAPQ9BX97 442 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 TBC1D22BQ9NU19 505 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 CLDND1Q9NY35 253 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 GINS2Q9Y248 185 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 KDM3AQ9Y4C1 1321 aa12.58□□□□□ -0.4
CCDC88C-213ENST00000557455 NID2Q14112 1375 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 NCK2O43639 380 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 RPS6KB1P23443 525 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 SSTR3P32745 418 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 NFX1Q12986 1120 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 PKN1Q16512 942 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 TMEM266Q2M3C6 531 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 PAN2Q504Q3 1202 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 ZNF484Q5JVG2 852 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 CKAP2LQ8IYA6 745 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 CMTR2Q8IYT2 770 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 GJD3Q8N144 294 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 FBXL16Q8N461 479 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 BICD2Q8TD16 824 aa12.57□□□□□ -0.4
CCDC88C-213ENST00000557455 KHSRPQ92945 711 aaKnown RBP eCLIP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms