RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZBTB10Q96DT7 871 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 POP1Q99575 1024 aaKnown RBP15.52■□□□□ 0.08
SS18-204ENST00000539244 ALG13Q9NP73 1137 aaKnown RBP15.52■□□□□ 0.08
SS18-204ENST00000539244 PADI3Q9ULW8 664 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 ZNF318Q5VUA4 2279 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 CNTNAP5Q8WYK1 1306 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 IGKV6D-21A0A0A0MT36 114 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 SMIM35A0A1B0GVV1 85 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 FOSP01100 380 aaPredicted RBP15.51■□□□□ 0.07
SS18-204ENST00000539244 ITGB1P05556 798 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 STAG3L1P0CL83 205 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 GTF2F1P35269 517 aaKnown RBP eCLIP15.51■□□□□ 0.07
SS18-204ENST00000539244 SLC26A2P50443 739 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 STAT5BP51692 787 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 CEP55Q53EZ4 464 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 WWC2Q6AWC2 1192 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 TYW1BQ6NUM6 668 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 PPP1R18Q6NYC8 613 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 MICU3Q86XE3 530 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 CCDC82Q8N4S0 544 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 CYP2W1Q8TAV3 490 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 SPPL3Q8TCT6 385 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 PPP2R3CQ969Q6 453 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 MSLNLQ96KJ4 702 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 SDF4Q9BRK5 362 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 ESYT1Q9BSJ8 1104 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 CELF4Q9BZC1 486 aaKnown RBP15.51■□□□□ 0.07
SS18-204ENST00000539244 RIC8AQ9NPQ8 531 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 TRPC6Q9Y210 931 aa15.51■□□□□ 0.07
SS18-204ENST00000539244 hCG_1984214I3L0E3 225 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 EYA4O95677 639 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 ARP10275 920 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 SCG2P13521 617 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 DNAJB1P25685 340 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 TMEM62Q0P6H9 643 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 FUT2Q10981 343 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 PAK2Q13177 524 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 ITGB3BPQ13352 177 aaPredicted RBP15.5■□□□□ 0.07
SS18-204ENST00000539244 HERC4Q5GLZ8 1057 aaPredicted RBP15.5■□□□□ 0.07
SS18-204ENST00000539244 RAB11FIP4Q86YS3 637 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 ZNF713Q8N859 430 aaPredicted RBP15.5■□□□□ 0.07
SS18-204ENST00000539244 TRAPPC12Q8WVT3 735 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 LRRC2Q9BYS8 371 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 TMX1Q9H3N1 280 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 AGO4Q9HCK5 861 aaKnown RBP15.5■□□□□ 0.07
SS18-204ENST00000539244 RBM28Q9NW13 759 aaKnown RBP15.5■□□□□ 0.07
SS18-204ENST00000539244 CD207Q9UJ71 328 aa15.5■□□□□ 0.07
SS18-204ENST00000539244 TRIOO75962 3097 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 MEIS1O00470 390 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 LINC01565O15544 149 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 SREBF1P36956 1147 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 CLUL1Q15846 466 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 APOA5Q6Q788 366 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 MTHFD1LQ6UB35 978 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 NIPA1Q7RTP0 329 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 EFHBQ8N7U6 833 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 KLHL23Q8NBE8 558 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 UIMC1Q96RL1 719 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 ANO3Q9BYT9 981 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 IGFLR1Q9H665 355 aa15.49■□□□□ 0.07
SS18-204ENST00000539244 WDFY4Q6ZS81 3184 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 FNDC1Q4ZHG4 1894 aaPredicted RBP15.48■□□□□ 0.07
SS18-204ENST00000539244 PLXNA4Q9HCM2 1894 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 TECTAO75443 2155 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 HBP1O60381 514 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 SARSP49591 514 aaKnown RBP15.48■□□□□ 0.07
SS18-204ENST00000539244 CLK2P49760 499 aaKnown RBP15.48■□□□□ 0.07
SS18-204ENST00000539244 NAPAP54920 295 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 KRT76Q01546 638 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 COASYQ13057 564 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 AP3B2Q13367 1082 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 ABHD15Q6UXT9 468 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 SYNE3Q6ZMZ3 975 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 ADGRD2Q7Z7M1 963 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 SMRP1Q8NCR6 262 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 ATP8B4Q8TF62 1192 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 POF1BQ8WVV4 589 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 GLT8D2Q9H1C3 349 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 ERVK-5Q9HDB9 667 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 CLEC1BQ9P126 229 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 COL1A2P08123 1366 aa15.48■□□□□ 0.07
SS18-204ENST00000539244 STXBP3O00186 592 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 CCNE2O96020 404 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 KLRC1P26715 233 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 NDUFV1P49821 464 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 ADCY7P51828 1080 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 EXOSC10Q01780 885 aaKnown RBP15.47■□□□□ 0.07
SS18-204ENST00000539244 UBE3AQ05086 875 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 PAN2Q504Q3 1202 aaKnown RBP15.47■□□□□ 0.07
SS18-204ENST00000539244 HFE2Q6ZVN8 426 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 RNF135Q8IUD6 432 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 EVPLQ92817 2033 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 PGBD1Q96JS3 809 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 RNF216Q9NWF9 866 aaPredicted RBP15.47■□□□□ 0.07
SS18-204ENST00000539244 BARHL2Q9NY43 387 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 MUTYHQ9UIF7 546 aa15.47■□□□□ 0.07
SS18-204ENST00000539244 SMCO2A6NFE2 343 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 DHX15O43143 795 aaKnown RBP15.46■□□□□ 0.07
SS18-204ENST00000539244 MGEA5O60502 916 aa15.46■□□□□ 0.07
SS18-204ENST00000539244 CSPG5O95196 566 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms