RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ZNF658Q5TYW1 1059 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 MSL1Q68DK7 614 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 NAIF1Q69YI7 327 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 CAPRIN2Q6IMN6 1127 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 C8orf74Q6P047 294 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 STK11IPQ8N1F8 1099 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 TMTC2Q8N394 836 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 MB21D1Q8N884 522 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ELOA3Q8NG57 546 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 SMCR8Q8TEV9 937 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 CPLX3Q8WVH0 158 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 LMBR1Q8WVP7 490 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ATRIPQ8WXE1 791 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 CCT6BQ92526 530 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ARL8AQ96BM9 186 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ACSBG1Q96GR2 724 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 RNPC3Q96LT9 517 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 NOD2Q9HC29 1040 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 TLR7Q9NYK1 1049 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 RGPD2P0DJD1 1756 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 UBR1Q8IWV7 1749 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ANKRD36CQ5JPF3 1778 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 MAST3O60307 1309 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 ATP8B3O60423 1300 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 C5P01031 1676 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 A6NHS1 94 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 CCT8L1PA6NM43 557 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 KCNJ18B7U540 433 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 E7EVH7 732 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 GCOM1H8Y6P7 765 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 ZNF213O14771 459 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 BUB1BO60566 1050 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 DTNBO60941 627 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 SMNDC1O75940 238 aaKnown RBP eCLIP7.36□□□□□ -1.23
USP28-207ENST00000538475 VIMP08670 466 aaKnown RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 MYZAPP0CAP1 466 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 SETSIPP0DME0 302 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 MYBL2P10244 700 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 XBP1P17861 261 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 EIF2S2P20042 333 aaKnown RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 HOXC9P31274 260 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 GCLCP48506 637 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 IDH3AP50213 366 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 ZNF131P52739 623 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 ELF3P78545 371 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 ROR2Q01974 943 aaKnown RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 MAP3K12Q12852 859 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 BLMHQ13867 455 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 GCKRQ14397 625 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 KCNJ12Q14500 433 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 KCNB1Q14721 858 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 NTRK3Q16288 839 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 PPP2R5EQ16537 467 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 CCDC57Q2TAC2 916 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 HAUS3Q68CZ6 603 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 MIS18BP1Q6P0N0 1132 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 FOXR2Q6PJQ5 311 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 APBB1IPQ7Z5R6 666 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 FAM228AQ86W67 206 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 DHX37Q8IY37 1157 aaKnown RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 DRAXINQ8NBI3 349 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 ZNF507Q8TCN5 953 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 SH3TC2Q8TF17 1288 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 PAGE5Q96GU1 130 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 SEC16BQ96JE7 1060 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 LRRC1Q9BTT6 524 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 METTL22Q9BUU2 404 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 OSBPL7Q9BZF2 842 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 TAF1DQ9H5J8 278 aaPredicted RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 IGFLR1Q9H665 355 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 CCDC134Q9H6E4 229 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 JADE2Q9NQC1 790 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 SLC12A6Q9UHW9 1150 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 RPL26L1Q9UNX3 145 aaKnown RBP7.36□□□□□ -1.23
USP28-207ENST00000538475 BCS1LQ9Y276 419 aa7.36□□□□□ -1.23
USP28-207ENST00000538475 NUP188Q5SRE5 1749 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 METP08581 1390 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 TTC26A0AVF1 554 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 TRIM75PA6NK02 468 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 ZNF233A6NK53 670 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 BTBD11A6QL63 1104 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 STXBP3O00186 592 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 PDE2AO00408 941 aaPredicted RBP7.35□□□□□ -1.23
USP28-207ENST00000538475 ZBTB43O43298 467 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 ORC4O43929 436 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 MICAL2O94851 1124 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 DEXIO95424 95 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 SRGNP10124 158 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 CNGA1P29973 690 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 TRAPPC10P48553 1259 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 RPS6KA3P51812 740 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 CCNHP51946 323 aaPredicted RBP7.35□□□□□ -1.23
USP28-207ENST00000538475 PPP2R2AP63151 447 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 TNNC1P63316 161 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 MRPS35P82673 323 aaKnown RBP7.35□□□□□ -1.23
USP28-207ENST00000538475 HDLBPQ00341 1268 aaKnown RBP7.35□□□□□ -1.23
USP28-207ENST00000538475 UBXN1Q04323 297 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 FAM69CQ0P6D2 419 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 TFCP2Q12800 502 aa7.35□□□□□ -1.23
USP28-207ENST00000538475 DYNC1I2Q13409 638 aaKnown RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms